Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   APT59_RS16505 Genome accession   NZ_CP013987
Coordinates   3615900..3616535 (-) Length   211 a.a.
NCBI ID   WP_059315847.1    Uniprot ID   A0AAX3L304
Organism   Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3610900..3621535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APT59_RS16470 (APT59_16470) petA 3611437..3612015 (-) 579 WP_059315841.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -
  APT59_RS16475 (APT59_16475) murB 3612012..3613034 (-) 1023 WP_059315842.1 UDP-N-acetylmuramate dehydrogenase -
  APT59_RS16480 (APT59_16480) - 3613024..3613491 (-) 468 WP_174523171.1 low molecular weight protein-tyrosine-phosphatase -
  APT59_RS16485 (APT59_16485) kdsB 3613498..3614262 (-) 765 WP_059315844.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  APT59_RS16490 (APT59_16490) - 3614259..3614444 (-) 186 WP_059232294.1 Trm112 family protein -
  APT59_RS16495 (APT59_16495) lpxK 3614459..3615466 (-) 1008 WP_059315845.1 tetraacyldisaccharide 4'-kinase -
  APT59_RS16500 (APT59_16500) - 3615463..3615903 (-) 441 WP_059315846.1 ExbD/TolR family protein -
  APT59_RS16505 (APT59_16505) exbB 3615900..3616535 (-) 636 WP_059315847.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  APT59_RS16510 (APT59_16510) comA 3616584..3618824 (-) 2241 WP_059315848.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  APT59_RS16515 (APT59_16515) - 3618936..3620177 (-) 1242 WP_059315849.1 lipoprotein-releasing ABC transporter permease subunit -
  APT59_RS16520 (APT59_16520) lolD 3620185..3620886 (-) 702 WP_026083696.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23065.12 Da        Isoelectric Point: 6.8860

>NTDB_id=166869 APT59_RS16505 WP_059315847.1 3615900..3616535(-) (exbB) [Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511]
MFEMVKAGGWMMLPIILSSILATAIIAERLWTLRRSRVAPPTLLAQVWRWIQDKQLNAERLRELRAGSPLGDILAAGLTN
SRHGRDIMKEAIEEAGSRVVHDLERYLNTLGSIAALAPLMGLLGTVFGMIDIFSAFMNDGMANAPILAGGISKALVTTAT
GLLVAIPAVFFHRYLLRRVDELVVGMEQEAVKLVDILHGDREVDVREGAPA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=166869 APT59_RS16505 WP_059315847.1 3615900..3616535(-) (exbB) [Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511]
GTGTTCGAAATGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCATCCTCAGTTCCATCCTGGCCACGGCCATCATCGC
CGAGCGGCTGTGGACCCTCAGGCGCAGCCGGGTCGCACCACCCACACTGCTCGCCCAGGTCTGGCGCTGGATCCAGGACA
AGCAGCTCAACGCCGAACGGCTGCGCGAACTGCGCGCCGGATCGCCCCTGGGCGACATCCTCGCTGCGGGCCTGACCAAT
TCCCGCCATGGTCGCGACATCATGAAGGAGGCCATCGAGGAAGCCGGCAGCCGCGTGGTGCATGACCTCGAGCGCTATCT
CAATACCCTCGGCAGCATCGCCGCGCTGGCGCCGCTGATGGGTCTGCTGGGCACGGTGTTCGGCATGATCGACATCTTCA
GCGCCTTTATGAACGACGGCATGGCCAATGCGCCCATTCTCGCCGGCGGTATCTCCAAGGCGCTGGTCACCACCGCCACC
GGTCTGCTGGTGGCGATTCCCGCGGTGTTCTTCCATCGCTATCTGCTGCGTCGCGTCGACGAGCTGGTGGTGGGCATGGA
GCAGGAAGCGGTGAAGCTGGTGGACATCCTCCATGGCGATCGCGAGGTGGACGTGCGCGAAGGAGCCCCGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

75

98.578

0.739

Multiple sequence alignment