Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BFP66_RS10290 Genome accession   NZ_CP017142
Coordinates   2096504..2097598 (+) Length   364 a.a.
NCBI ID   WP_024395965.1    Uniprot ID   -
Organism   Streptococcus suis strain GZ0565     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2091504..2102598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFP66_RS10265 (BFP66_10265) pgsA 2092023..2092562 (-) 540 WP_014736596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BFP66_RS10270 (BFP66_10270) rodZ 2092572..2093429 (-) 858 WP_024395962.1 cytoskeleton protein RodZ -
  BFP66_RS10275 (BFP66_10275) yfmH 2093511..2094794 (-) 1284 WP_024395963.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  BFP66_RS10280 (BFP66_10280) yfmF 2094791..2096044 (-) 1254 WP_063725404.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  BFP66_RS10285 (BFP66_10285) yaaA 2096118..2096501 (+) 384 WP_014736600.1 S4 domain-containing protein YaaA -
  BFP66_RS10290 (BFP66_10290) recF 2096504..2097598 (+) 1095 WP_024395965.1 DNA replication/repair protein RecF Machinery gene
  BFP66_RS10295 (BFP66_10295) guaB 2097669..2099150 (-) 1482 WP_015647590.1 IMP dehydrogenase -
  BFP66_RS10300 (BFP66_10300) trpS 2099382..2100407 (-) 1026 WP_024395966.1 tryptophan--tRNA ligase -
  BFP66_RS10305 (BFP66_10305) - 2100762..2101634 (+) 873 WP_015647591.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42277.38 Da        Isoelectric Point: 7.2328

>NTDB_id=166839 BFP66_RS10290 WP_024395965.1 2096504..2097598(+) (recF) [Streptococcus suis strain GZ0565]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIKLTDDVNLIDKFLT
ELERYRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=166839 BFP66_RS10290 WP_024395965.1 2096504..2097598(+) (recF) [Streptococcus suis strain GZ0565]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGTAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATCCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTATTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTAGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTTTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAAACCTCAATCAAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAATTGGAAAGGTATCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATTG
AGCTGATGAAGGAGGTCACACGAGAATACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTAGATAATAATCGTCAA
ATCAAACTACTAGAAACTATCACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

70.083

99.176

0.695
  recF Bacillus subtilis subsp. subtilis str. 168

43.514

100

0.442