Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AWC34_RS08655 Genome accession   NZ_CP013980
Coordinates   1796680..1797099 (-) Length   139 a.a.
NCBI ID   WP_021339937.1    Uniprot ID   -
Organism   Staphylococcus equorum strain KM1031     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1791680..1802099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWC34_RS08630 (AWC34_08625) thiE 1792201..1792839 (-) 639 WP_021339941.1 thiamine phosphate synthase -
  AWC34_RS08635 (AWC34_08630) thiM 1792839..1793630 (-) 792 WP_031266140.1 hydroxyethylthiazole kinase -
  AWC34_RS08640 (AWC34_08635) thiD 1793623..1794444 (-) 822 WP_021339939.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AWC34_RS08645 (AWC34_08640) tenA 1794437..1795126 (-) 690 WP_021339938.1 thiaminase II -
  AWC34_RS08650 (AWC34_08645) - 1795516..1796196 (-) 681 WP_002507088.1 transglycosylase family protein -
  AWC34_RS08655 (AWC34_08650) ssb 1796680..1797099 (-) 420 WP_021339937.1 single-stranded DNA-binding protein Machinery gene
  AWC34_RS08660 (AWC34_08655) - 1797290..1797730 (+) 441 WP_002507086.1 YwpF-like family protein -
  AWC34_RS08665 (AWC34_08660) fabZ 1797799..1798239 (-) 441 WP_002507085.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AWC34_RS08670 (AWC34_08665) murA 1798297..1799562 (-) 1266 WP_021339774.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  AWC34_RS08675 (AWC34_08670) - 1799669..1799902 (-) 234 WP_002507083.1 DUF1146 family protein -
  AWC34_RS08680 (AWC34_08675) - 1800226..1800630 (-) 405 WP_002507082.1 F0F1 ATP synthase subunit epsilon -
  AWC34_RS08685 (AWC34_08680) atpD 1800650..1802062 (-) 1413 WP_021339775.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16259.49 Da        Isoelectric Point: 4.8624

>NTDB_id=166817 AWC34_RS08655 WP_021339937.1 1796680..1797099(-) (ssb) [Staphylococcus equorum strain KM1031]
MINNIVIVGRLTKDPKIYEKEGKKLATFCVAVNRNYKDKDQNTVCDYLYCKAFGKIADNIEKYINQGSLVGITGQMQSRK
FEKEGQMHFVSEIYIETIKFMSPRTKNETDELFEPFPLEQDHESFNEINIQENDIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=166817 AWC34_RS08655 WP_021339937.1 1796680..1797099(-) (ssb) [Staphylococcus equorum strain KM1031]
ATGATAAATAACATCGTCATTGTAGGACGATTAACAAAAGATCCCAAAATTTATGAAAAGGAGGGGAAGAAGTTAGCTAC
CTTTTGTGTAGCAGTAAATAGAAATTATAAAGATAAAGATCAAAATACAGTCTGTGATTATTTGTATTGTAAAGCATTTG
GTAAAATTGCTGACAATATTGAAAAGTATATCAATCAAGGATCACTTGTAGGTATTACTGGACAAATGCAATCACGTAAA
TTTGAAAAAGAAGGACAGATGCATTTTGTATCAGAAATTTATATCGAAACAATTAAATTCATGTCTCCACGAACTAAAAA
TGAAACGGATGAACTTTTTGAACCATTCCCATTAGAGCAAGATCATGAATCATTCAACGAAATTAATATTCAAGAAAATG
ATATATACGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

60.87

99.281

0.604
  ssb Staphylococcus aureus MW2

60.145

99.281

0.597

Multiple sequence alignment