Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   AWC34_RS03960 Genome accession   NZ_CP013980
Coordinates   825053..825616 (+) Length   187 a.a.
NCBI ID   WP_002508070.1    Uniprot ID   A0AAP7LV23
Organism   Staphylococcus equorum strain KM1031     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 820053..830616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWC34_RS03935 (AWC34_03935) - 820727..822235 (+) 1509 WP_021339510.1 bifunctional metallophosphatase/5'-nucleotidase -
  AWC34_RS03940 (AWC34_03940) - 822497..823099 (-) 603 WP_002508074.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  AWC34_RS03945 (AWC34_03945) - 823106..823291 (-) 186 WP_002508073.1 YkvS family protein -
  AWC34_RS03950 (AWC34_03950) - 823492..824481 (+) 990 WP_002508072.1 lipoate--protein ligase -
  AWC34_RS03955 (AWC34_03955) - 824582..824800 (-) 219 WP_002508071.1 IDEAL domain-containing protein -
  AWC34_RS03960 (AWC34_03960) comK/comK1 825053..825616 (+) 564 WP_002508070.1 competence protein ComK Regulator
  AWC34_RS03975 (AWC34_03975) - 826294..826608 (+) 315 WP_021339511.1 ArsR/SmtB family transcription factor -
  AWC34_RS03980 (AWC34_03980) arsB 826608..827900 (+) 1293 WP_081288847.1 arsenite efflux transporter membrane subunit ArsB -
  AWC34_RS03985 (AWC34_03985) arsC 827918..828313 (+) 396 WP_065367381.1 arsenate reductase (thioredoxin) -
  AWC34_RS03990 (AWC34_03990) - 828786..829040 (+) 255 WP_021339514.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  AWC34_RS03995 (AWC34_03995) - 829391..829603 (-) 213 WP_046465163.1 TM2 domain-containing protein -
  AWC34_RS04000 (AWC34_04000) - 829778..830335 (+) 558 WP_064783036.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 22058.46 Da        Isoelectric Point: 9.1458

>NTDB_id=166799 AWC34_RS03960 WP_002508070.1 825053..825616(+) (comK/comK1) [Staphylococcus equorum strain KM1031]
MIQQYIIKKGDMALQPCNLSIGLNEGTCVLKYKEERDIVKERTHKIIDRSCRFYGSSYVFKKEDTMRITGINSKPPILFT
PLFPTYFFPTHSDRKEENTWINIHYVQTIRALKDKKCKITFVDNQTIVVNISAHSMHHQYLNGIYYYYMMDRAARVATFD
PESPIDYTKPQLNIYEALAKYSLFENK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=166799 AWC34_RS03960 WP_002508070.1 825053..825616(+) (comK/comK1) [Staphylococcus equorum strain KM1031]
ATGATTCAACAATACATTATTAAAAAAGGTGATATGGCTCTTCAACCTTGTAATTTATCTATAGGACTAAATGAAGGTAC
TTGTGTATTAAAGTATAAGGAGGAGCGTGATATTGTAAAGGAACGGACACATAAGATTATAGATCGTTCATGTAGATTTT
ATGGTAGCAGTTATGTATTTAAAAAAGAAGACACAATGAGAATTACAGGTATTAATAGTAAACCCCCGATATTATTCACT
CCATTATTTCCTACTTATTTTTTTCCTACACATTCAGACCGAAAAGAAGAAAACACTTGGATCAATATTCATTATGTACA
AACCATAAGAGCTTTAAAAGATAAAAAATGTAAAATCACATTTGTCGATAACCAGACTATAGTTGTTAATATTTCAGCAC
ACAGTATGCATCATCAATACTTAAATGGTATATATTATTACTATATGATGGATAGAGCAGCTAGGGTGGCTACTTTTGAT
CCTGAATCTCCTATAGACTATACGAAACCACAATTAAATATTTATGAAGCATTAGCAAAATATTCTCTATTTGAAAATAA
ATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(3-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

51.913

97.861

0.508
  comK/comK1 Staphylococcus aureus N315

51.913

97.861

0.508

Multiple sequence alignment