Detailed information NTG0166730

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ATY43_RS03470
• Genome accession: NZ_CP013961
• Coordinates: 751423..752874 (-)
• Length: 483 a.a.
• NCBI ID: WP_171970756.1
• Uniprot ID: -
• Organism: Xanthomonas oryzae pv. oryzae strain PXO145
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	746840..757728	751423..752874	within	0

Gene organization within MGE regions

Location: 746840..757728

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ATY43_RS03445 (ATY43_03430)	-	746897..747466 (+)	570	WP_229001934.1	hypothetical protein	-
ATY43_RS03450 (ATY43_03435)	-	747436..748962 (+)	1527	WP_011258362.1	membrane protein	-
ATY43_RS03455 (ATY43_03440)	pilB	748997..750730 (+)	1734	WP_011408072.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ATY43_RS27540 (ATY43_03445)	-	750739..751086 (-)	348	WP_305954854.1	Fic family protein	-
ATY43_RS27545 (ATY43_03450)	-	751087..751350 (-)	264	WP_232460288.1	YhfG family protein	-
ATY43_RS03470 (ATY43_03455)	pilR	751423..752874 (-)	1452	WP_171970756.1	sigma-54 dependent transcriptional regulator	Regulator
ATY43_RS03475 (ATY43_03460)	-	753145..754758 (-)	1614	WP_044756976.1	HAMP domain-containing sensor histidine kinase	-
ATY43_RS03480 (ATY43_03465)	sucC	754992..756161 (+)	1170	WP_011258367.1	ADP-forming succinate--CoA ligase subunit beta	-
ATY43_RS03485 (ATY43_03470)	sucD	756186..757061 (+)	876	WP_011258368.1	succinate--CoA ligase subunit alpha	-
ATY43_RS03490 (ATY43_03475)	-	757234..757728 (+)	495	WP_044756974.1	hypothetical protein	-

Sequence

Protein

• Length: 483 a.a.
• Molecular weight: 52446.18 Da
• Isoelectric Point: 6.8290

>NTDB_id=166730 ATY43_RS03470 WP_171970756.1 751423..752874(-) (pilR) [Xanthomonas oryzae pv. oryzae strain PXO145]
MRRAPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPIYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide

• Length: 1452 bp

>NTDB_id=166730 ATY43_RS03470 WP_171970756.1 751423..752874(-) (pilR) [Xanthomonas oryzae pv. oryzae strain PXO145]
TTGCGCCGCGCCCCACTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCTGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGATCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTCC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTATTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (440-480)

• Sigma-54 interaction domain (Sigma54_activat) (161-326)

• Response regulator receiver domain (Response_reg) (28-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.987	95.652	0.602
pilR	Acinetobacter baumannii strain A118	48.268	95.652	0.462