Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BS16045_RS17585 Genome accession   NZ_CP017112
Coordinates   3341588..3342223 (-) Length   211 a.a.
NCBI ID   WP_069322888.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS16045     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3336588..3347223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS16045_RS17565 (BS16045_03473) yvzF 3337645..3337830 (-) 186 WP_003244599.1 YvzF family protein -
  BS16045_RS17570 (BS16045_03474) gerAA 3337948..3339396 (+) 1449 WP_033884692.1 spore germination receptor protein GerAA -
  BS16045_RS17575 (BS16045_03475) gerAB 3339365..3340462 (+) 1098 WP_029318427.1 spore germination receptor protein GerAB -
  BS16045_RS17580 (BS16045_03476) gerAC 3340459..3341580 (+) 1122 WP_069322887.1 spore germination receptor protein GerAC -
  BS16045_RS17585 (BS16045_03477) vraR 3341588..3342223 (-) 636 WP_069322888.1 two-component system response regulator LiaR Regulator
  BS16045_RS17590 (BS16045_03478) liaS 3342201..3343283 (-) 1083 WP_069322889.1 two-component system sensor histidine kinase LiaS -
  BS16045_RS17595 (BS16045_03479) liaF 3343280..3344004 (-) 725 Protein_3408 LiaRS two-component regulatory system accessory protein LiaF -
  BS16045_RS17600 (BS16045_03481) liaG 3344038..3344910 (-) 873 WP_069322890.1 DUF4097 domain-containing protein -
  BS16045_RS17605 (BS16045_03482) liaH 3345011..3345688 (-) 678 WP_015714684.1 stress responsive protein LiaH -
  BS16045_RS17610 (BS16045_03483) liaI 3345715..3346095 (-) 381 WP_069322891.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23179.78 Da        Isoelectric Point: 4.9049

>NTDB_id=166635 BS16045_RS17585 WP_069322888.1 3341588..3342223(-) (vraR) [Bacillus subtilis strain BS16045]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAAELSPDVILMDLVMEGMDGIEATKQIWRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=166635 BS16045_RS17585 WP_069322888.1 3341588..3342223(-) (vraR) [Bacillus subtilis strain BS16045]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGTCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCGGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTGAAGCTACAAAGCAAATTTGGAGGGAGCTTTCCGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCTCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACCGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.857

99.526

0.526
  degU Bacillus subtilis subsp. subtilis str. 168

38.565

100

0.408

Multiple sequence alignment