Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BS16045_RS05170 Genome accession   NZ_CP017112
Coordinates   987941..988588 (+) Length   215 a.a.
NCBI ID   WP_021479675.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS16045     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 982941..993588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS16045_RS05155 (BS16045_01009) glpD 983112..984779 (+) 1668 WP_021479678.1 glycerol-3-phosphate dehydrogenase -
  BS16045_RS05160 (BS16045_01010) pgcA 984911..986656 (+) 1746 WP_069322474.1 phosphoglucomutase -
  BS16045_RS05165 (BS16045_01011) yhcY 986805..987944 (+) 1140 WP_069322475.1 two-component system sensor histidine kinase YhcY -
  BS16045_RS05170 (BS16045_01012) vraR 987941..988588 (+) 648 WP_021479675.1 two-component system response regulator YhcZ Regulator
  BS16045_RS05175 (BS16045_01013) yhdA 988585..989109 (+) 525 WP_069322476.1 FMN-dependent NADPH-azoreductase -
  BS16045_RS05180 (BS16045_01014) yhdB 989124..989366 (-) 243 WP_003233373.1 YhdB family protein -
  BS16045_RS05185 (BS16045_01015) yhdC 989567..989890 (+) 324 WP_003233371.1 YqzG/YhdC family protein -
  BS16045_RS05190 (BS16045_01016) lytF 989932..991398 (-) 1467 WP_069322477.1 peptidoglycan endopeptidase LytF -
  BS16045_RS05195 (BS16045_01017) nsrR 991551..991991 (-) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24163.80 Da        Isoelectric Point: 6.3039

>NTDB_id=166541 BS16045_RS05170 WP_021479675.1 987941..988588(+) (vraR) [Bacillus subtilis strain BS16045]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPETNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=166541 BS16045_RS05170 WP_021479675.1 987941..988588(+) (vraR) [Bacillus subtilis strain BS16045]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACTGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGAGACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGACCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.053

100

0.4