Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AUL54_RS10175 Genome accession   NZ_CP013950
Coordinates   2136896..2138275 (-) Length   459 a.a.
NCBI ID   WP_060963752.1    Uniprot ID   A0AAI8HS47
Organism   Bacillus sp. SDLI1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2131896..2143275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUL54_RS10155 (AUL54_10160) ispF 2133415..2133891 (-) 477 WP_016935912.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  AUL54_RS10160 (AUL54_10165) ispD 2133884..2134582 (-) 699 WP_060965083.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AUL54_RS10165 (AUL54_10170) - 2134596..2135696 (-) 1101 WP_016935914.1 PIN/TRAM domain-containing protein -
  AUL54_RS10170 (AUL54_10175) disA 2135810..2136892 (-) 1083 WP_003156401.1 DNA integrity scanning diadenylate cyclase DisA -
  AUL54_RS10175 (AUL54_10180) radA 2136896..2138275 (-) 1380 WP_060963752.1 DNA repair protein RadA Machinery gene
  AUL54_RS10180 (AUL54_10185) clpC 2138369..2140804 (-) 2436 WP_060963753.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  AUL54_RS10185 (AUL54_10190) - 2140801..2141892 (-) 1092 WP_060963754.1 protein arginine kinase -
  AUL54_RS10190 (AUL54_10195) - 2141892..2142449 (-) 558 WP_016935918.1 UvrB/UvrC motif-containing protein -
  AUL54_RS10195 (AUL54_10200) ctsR 2142463..2142927 (-) 465 WP_016935919.1 transcriptional regulator CtsR -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49487.82 Da        Isoelectric Point: 6.9565

>NTDB_id=166472 AUL54_RS10175 WP_060963752.1 2136896..2138275(-) (radA) [Bacillus sp. SDLI1]
MAKSKTKFICHSCGYESAKWMGKCPGCGAWNTMVEETVKKEPANRRAAFSHSVQTVQKPSPITSIETSEEPRVHTKLEEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLADTAGSVLYISGEESVKQTKLRADRLGINSQLLHVLSETDMEYIS
SAIQEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTNGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGASGSSIVASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLIMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPNPADCFIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMVIPEANAGGWTIPKGIEVVGVANVAEALRTSLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=166472 AUL54_RS10175 WP_060963752.1 2136896..2138275(-) (radA) [Bacillus sp. SDLI1]
ATGGCTAAATCAAAAACAAAATTCATCTGCCACTCATGCGGTTATGAATCCGCAAAATGGATGGGGAAATGCCCGGGCTG
CGGGGCTTGGAATACAATGGTGGAAGAAACCGTCAAAAAAGAGCCGGCGAATCGGCGGGCGGCTTTCTCCCACTCCGTTC
AAACCGTCCAGAAACCATCACCCATTACATCAATTGAAACATCAGAAGAACCCCGTGTTCACACCAAGCTCGAAGAATTC
AACAGAGTGCTTGGCGGCGGCGTTGTGAAGGGCTCGTTAGTATTAATCGGCGGCGACCCCGGCATCGGGAAATCAACGCT
CCTTCTTCAAGTATCCGCACAATTAGCAGACACGGCCGGCAGCGTGCTTTACATTTCCGGGGAGGAATCCGTGAAGCAAA
CGAAGCTGCGCGCCGACAGGCTTGGAATCAACAGCCAATTGTTACATGTTTTATCTGAAACCGATATGGAGTATATTTCG
TCTGCTATACAAGAGATGAATCCCGCATTTGTTGTTGTAGACTCCATTCAGACCGTTTACCAAAGCGACATCACCTCAGC
TCCCGGCAGTGTATCACAAGTAAGAGAGTGTACGGCTGAATTGATGAAAATCGCGAAAACAAACGGCATTCCGATTTTTA
TCGTCGGACACGTCACAAAAGAAGGATCGATCGCTGGGCCGAGATTGCTTGAGCATATGGTCGATACCGTTCTATACTTT
GAAGGAGAGCGGCACCATACATTCCGTATTTTGCGGGCTGTAAAAAACCGTTTCGGCTCAACAAATGAAATGGGCATCTT
TGAAATGCGGGAAGAGGGGCTTACAGAAGTGCTGAACCCTTCGGAAATTTTCTTGGAGGAGCGTTCTGCCGGGGCTTCGG
GTTCGAGTATCGTTGCGTCAATGGAAGGAACGAGACCGATTCTGGTTGAAATTCAGGCGCTCATATCACCGACCAGCTTT
GGAAACCCGCGCCGCATGGCTACAGGGATTGACCACAACAGGGTGTCGTTAATCATGGCTGTGCTTGAGAAGCGGGTGGG
GCTATTGCTTCAGAATCAAGATGCGTACTTAAAAGTCGCCGGCGGGGTCAAACTGGATGAACCGGCGATTGATTTGGCAG
TAGCCGTCAGCATTGCTTCAAGCTTCAGAGATACACCGCCGAATCCTGCAGATTGCTTTATCGGTGAAGTGGGTCTGACA
GGAGAAGTCCGCAGGGTGTCAAGAATCGAACAGCGCGTAAAAGAAGCGGCGAAACTCGGCTTCAAGCGTATGGTCATACC
TGAGGCGAATGCAGGCGGATGGACAATACCAAAAGGGATTGAGGTTGTCGGAGTAGCAAATGTTGCAGAAGCGCTTCGTA
CTTCATTAGGAGGATCATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

92.795

99.782

0.926
  radA Streptococcus pneumoniae Rx1

64.018

98.693

0.632
  radA Streptococcus pneumoniae D39

64.018

98.693

0.632
  radA Streptococcus pneumoniae R6

64.018

98.693

0.632
  radA Streptococcus pneumoniae TIGR4

64.018

98.693

0.632
  radA Streptococcus mitis NCTC 12261

64.018

98.693

0.632
  radA Streptococcus mitis SK321

63.797

98.693

0.63

Multiple sequence alignment