Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AUL54_RS09015 Genome accession   NZ_CP013950
Coordinates   1915898..1916335 (+) Length   145 a.a.
NCBI ID   WP_060963635.1    Uniprot ID   A0AAI8N1S1
Organism   Bacillus sp. SDLI1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1910898..1921335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUL54_RS09000 (AUL54_09005) - 1913756..1914118 (-) 363 WP_060963633.1 helix-turn-helix domain-containing protein -
  AUL54_RS09005 (AUL54_09010) hxlA 1914351..1914986 (+) 636 WP_016936796.1 3-hexulose-6-phosphate synthase -
  AUL54_RS09010 (AUL54_09015) hxlB 1914983..1915540 (+) 558 WP_060963634.1 6-phospho-3-hexuloisomerase -
  AUL54_RS09015 (AUL54_09020) nucA/comI 1915898..1916335 (+) 438 WP_060963635.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AUL54_RS09020 (AUL54_09025) nin/comJ 1916357..1916755 (+) 399 WP_047476185.1 competence protein ComJ Regulator
  AUL54_RS09025 (AUL54_09030) - 1916915..1917185 (-) 271 Protein_1838 family 1 glycosylhydrolase -
  AUL54_RS09030 (AUL54_09035) - 1917286..1917609 (-) 324 WP_060963637.1 YckD family protein -
  AUL54_RS09035 (AUL54_09040) - 1917682..1918116 (-) 435 WP_060963638.1 RDD family protein -
  AUL54_RS09040 (AUL54_09045) - 1918133..1919269 (-) 1137 WP_060965076.1 zinc-dependent alcohol dehydrogenase -
  AUL54_RS09045 (AUL54_09050) - 1919333..1920535 (-) 1203 WP_060963639.1 GTP-binding protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16082.39 Da        Isoelectric Point: 8.4850

>NTDB_id=166469 AUL54_RS09015 WP_060963635.1 1915898..1916335(+) (nucA/comI) [Bacillus sp. SDLI1]
MKTLKALLLVLIIIAGAVAALIKGDIFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHPSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=166469 AUL54_RS09015 WP_060963635.1 1915898..1916335(+) (nucA/comI) [Bacillus sp. SDLI1]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTTGCGGCCCTGATCAAGGGTGATATTTT
CTCAGATAACGAGCAGACCGTTCAGAAAAGCGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATCCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTAAAAACGGGGTACGACAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGGGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCAGATGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.016

86.897

0.634

Multiple sequence alignment