Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AUL54_RS02570 Genome accession   NZ_CP013950
Coordinates   594790..595689 (-) Length   299 a.a.
NCBI ID   WP_060962800.1    Uniprot ID   A0AAI8HPH4
Organism   Bacillus sp. SDLI1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 589790..600689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUL54_RS02555 (AUL54_02555) xerC 590174..591091 (-) 918 WP_060962798.1 tyrosine recombinase XerC -
  AUL54_RS02560 (AUL54_02560) trmFO 591161..592468 (-) 1308 WP_016936130.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AUL54_RS02565 (AUL54_02565) topA 592533..594608 (-) 2076 WP_060962799.1 type I DNA topoisomerase -
  AUL54_RS02570 (AUL54_02570) dprA 594790..595689 (-) 900 WP_060962800.1 DNA-processing protein DprA Machinery gene
  AUL54_RS02575 (AUL54_02575) sucD 595757..596659 (-) 903 WP_060962801.1 succinate--CoA ligase subunit alpha -
  AUL54_RS02580 (AUL54_02580) sucC 596688..597845 (-) 1158 WP_016936134.1 ADP-forming succinate--CoA ligase subunit beta -
  AUL54_RS02585 (AUL54_02585) - 598020..598301 (-) 282 WP_060962802.1 FlhB-like flagellar biosynthesis protein -
  AUL54_RS02590 (AUL54_02590) - 598298..600001 (-) 1704 WP_060962803.1 hypothetical protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32994.22 Da        Isoelectric Point: 8.7529

>NTDB_id=166445 AUL54_RS02570 WP_060962800.1 594790..595689(-) (dprA) [Bacillus sp. SDLI1]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLRDPHPLTVLSEGKTAPKAIFREIERKDPELDEVLSEYRREGITVI
PISSSRYPSWLKTIYDPPVVLFAKGNTQLLEKGRKIGIVGTRKPTEDGIKAVGHLTAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=166445 AUL54_RS02570 WP_060962800.1 594790..595689(-) (dprA) [Bacillus sp. SDLI1]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATCAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCCCTGTCTTTTTTACGGGACCCGCATCCATTAACCGTTTTGTCAGAAGGAAAAACAGCTCCGAAAGCCA
TTTTTCGAGAAATAGAGCGCAAGGATCCGGAACTCGATGAAGTTCTGTCCGAATACCGCCGCGAAGGCATTACTGTCATC
CCGATTTCATCAAGCCGCTATCCTTCATGGCTTAAAACGATTTATGATCCGCCCGTCGTCTTGTTTGCAAAAGGGAACAC
GCAGCTTCTTGAAAAAGGCCGAAAAATTGGTATTGTGGGCACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTACCGCCGAACTCTCAAAAAAAGGCTGGGTCATCGTAAGCGGGCTTGCATCCGGCATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATTTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCACCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAGTGGCACTTTC
CGATGAGAAACCGTATAATCAGCGGATTAAGTGAAGGAATTGTAGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGGAGAGAGGTATTTGCCGTTCCCGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTGTGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

71.237

100

0.712
  dprA Lactococcus lactis subsp. cremoris KW2

41.577

93.311

0.388
  dprA Streptococcus mutans UA159

43.346

87.96

0.381

Multiple sequence alignment