Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | SE1UMMC_RS09495 | Genome accession | NZ_CP013943 |
| Coordinates | 1859790..1860185 (-) | Length | 131 a.a. |
| NCBI ID | WP_001829977.1 | Uniprot ID | A0A4Q9W3V8 |
| Organism | Staphylococcus epidermidis strain DAR1907 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1854790..1865185
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SE1UMMC_RS09470 (SE1UMMC_09050) | thiE | 1855530..1856168 (-) | 639 | WP_002505076.1 | thiamine phosphate synthase | - |
| SE1UMMC_RS09475 (SE1UMMC_09055) | thiM | 1856174..1856962 (-) | 789 | WP_101750563.1 | hydroxyethylthiazole kinase | - |
| SE1UMMC_RS09480 (SE1UMMC_09060) | thiD | 1856955..1857776 (-) | 822 | WP_001832736.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| SE1UMMC_RS09485 (SE1UMMC_09065) | tenA | 1857769..1858458 (-) | 690 | WP_001829894.1 | thiaminase II | - |
| SE1UMMC_RS09490 (SE1UMMC_09070) | - | 1858743..1859402 (-) | 660 | WP_001829904.1 | transglycosylase family protein | - |
| SE1UMMC_RS09495 (SE1UMMC_09075) | ssb | 1859790..1860185 (-) | 396 | WP_001829977.1 | single-stranded DNA-binding protein | Machinery gene |
| SE1UMMC_RS09500 (SE1UMMC_09080) | - | 1860376..1860816 (+) | 441 | WP_001829935.1 | YwpF-like family protein | - |
| SE1UMMC_RS09505 (SE1UMMC_09085) | fabZ | 1861134..1861571 (-) | 438 | WP_001829953.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| SE1UMMC_RS09510 (SE1UMMC_09090) | murA | 1861605..1862870 (-) | 1266 | WP_001829978.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| SE1UMMC_RS09515 (SE1UMMC_09095) | - | 1862980..1863213 (-) | 234 | WP_002456242.1 | DUF1146 family protein | - |
| SE1UMMC_RS09520 (SE1UMMC_09100) | - | 1863362..1863766 (-) | 405 | WP_001829924.1 | F0F1 ATP synthase subunit epsilon | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15158.08 Da Isoelectric Point: 5.2661
>NTDB_id=166409 SE1UMMC_RS09495 WP_001829977.1 1859790..1860185(-) (ssb) [Staphylococcus epidermidis strain DAR1907]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDINEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDINEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
Nucleotide
Download Length: 396 bp
>NTDB_id=166409 SE1UMMC_RS09495 WP_001829977.1 1859790..1860185(-) (ssb) [Staphylococcus epidermidis strain DAR1907]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATATTAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATATTAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
73.282 |
100 |
0.733 |
| ssb | Staphylococcus aureus MW2 |
72.519 |
100 |
0.725 |