Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   AVT04_RS09060 Genome accession   NZ_CP013939
Coordinates   1709417..1710229 (+) Length   270 a.a.
NCBI ID   WP_011681204.1    Uniprot ID   A0AAP2RND8
Organism   Streptococcus thermophilus strain S9     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1704417..1715229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS09035 (AVT04_09035) - 1704511..1705209 (-) 699 WP_011226087.1 amino acid ABC transporter permease -
  AVT04_RS09040 (AVT04_09040) - 1705227..1706060 (-) 834 WP_011227276.1 transporter substrate-binding domain-containing protein -
  AVT04_RS09045 (AVT04_09045) - 1706072..1706839 (-) 768 WP_011227275.1 amino acid ABC transporter ATP-binding protein -
  AVT04_RS09050 (AVT04_09050) vicR 1707371..1708078 (+) 708 WP_011227274.1 response regulator YycF Regulator
  AVT04_RS09055 (AVT04_09055) vicK 1708071..1709411 (+) 1341 WP_011227273.1 cell wall metabolism sensor histidine kinase VicK Regulator
  AVT04_RS09060 (AVT04_09060) vicX 1709417..1710229 (+) 813 WP_011681204.1 MBL fold metallo-hydrolase Regulator
  AVT04_RS09065 (AVT04_09065) - 1710289..1710650 (+) 362 Protein_1691 YbaN family protein -
  AVT04_RS09070 (AVT04_09070) - 1710702..1711916 (-) 1215 WP_011227270.1 aminoacyltransferase -
  AVT04_RS09075 (AVT04_09075) yidA 1711918..1712727 (-) 810 WP_011226081.1 sugar-phosphatase -
  AVT04_RS10230 - 1712935..1713815 (+) 881 Protein_1694 GNAT family N-acetyltransferase -
  AVT04_RS09085 (AVT04_09085) - 1713907..1714293 (+) 387 WP_002953113.1 DUF1934 domain-containing protein -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30045.01 Da        Isoelectric Point: 5.5779

>NTDB_id=166360 AVT04_RS09060 WP_011681204.1 1709417..1710229(+) (vicX) [Streptococcus thermophilus strain S9]
MTSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=166360 AVT04_RS09060 WP_011681204.1 1709417..1710229(+) (vicX) [Streptococcus thermophilus strain S9]
ATGACCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCAGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCCAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.985

99.259

0.774

Multiple sequence alignment