Detailed information NTG0166358

Bioinformatically predicted

Overview

• Name: vicR
• Type: Regulator
• Locus tag: AVT04_RS09050
• Genome accession: NZ_CP013939
• Coordinates: 1707371..1708078 (+)
• Length: 235 a.a.
• NCBI ID: WP_011227274.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain S9
• Function: repress comCDE expression; repress comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 1702371..1713078

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVT04_RS09020 (AVT04_09020)	-	1702647..1702835 (+)	189	WP_011227277.1	DNA-directed RNA polymerase subunit beta	-
AVT04_RS09025 (AVT04_09025)	endA	1702897..1703778 (+)	882	WP_011226089.1	DNA/RNA non-specific endonuclease	Machinery gene
AVT04_RS09030 (AVT04_09030)	-	1703849..1704499 (-)	651	WP_011226088.1	amino acid ABC transporter permease	-
AVT04_RS09035 (AVT04_09035)	-	1704511..1705209 (-)	699	WP_011226087.1	amino acid ABC transporter permease	-
AVT04_RS09040 (AVT04_09040)	-	1705227..1706060 (-)	834	WP_011227276.1	transporter substrate-binding domain-containing protein	-
AVT04_RS09045 (AVT04_09045)	-	1706072..1706839 (-)	768	WP_011227275.1	amino acid ABC transporter ATP-binding protein	-
AVT04_RS09050 (AVT04_09050)	vicR	1707371..1708078 (+)	708	WP_011227274.1	response regulator YycF	Regulator
AVT04_RS09055 (AVT04_09055)	vicK	1708071..1709411 (+)	1341	WP_011227273.1	cell wall metabolism sensor histidine kinase VicK	Regulator
AVT04_RS09060 (AVT04_09060)	vicX	1709417..1710229 (+)	813	WP_011681204.1	MBL fold metallo-hydrolase	Regulator
AVT04_RS09065 (AVT04_09065)	-	1710289..1710650 (+)	362	Protein_1691	YbaN family protein	-
AVT04_RS09070 (AVT04_09070)	-	1710702..1711916 (-)	1215	WP_011227270.1	aminoacyltransferase	-
AVT04_RS09075 (AVT04_09075)	yidA	1711918..1712727 (-)	810	WP_011226081.1	sugar-phosphatase	-

Sequence

Protein

• Length: 235 a.a.
• Molecular weight: 27115.09 Da
• Isoelectric Point: 5.0130

>NTDB_id=166358 AVT04_RS09050 WP_011227274.1 1707371..1708078(+) (vicR) [Streptococcus thermophilus strain S9]
MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGLEIVKEIRKTSHTPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTETIETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVEL
THREFELLFHLATHMGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKNYD

Nucleotide

• Length: 708 bp

>NTDB_id=166358 AVT04_RS09050 WP_011227274.1 1707371..1708078(+) (vicR) [Streptococcus thermophilus strain S9]
ATGAAAAAAATTCTAGTTGTTGATGATGAAAGACCAATCTCCGATATCATCAAGTTTAACCTTACTAAGGAGGGTTATGA
AGTGGTTACGGCCTTTGATGGGCGAGAAGCTTTGGAACAATTTGAAGCTAAAAAACCAGACTTGGTTATTCTGGACTTGA
TGTTGCCTGAACTGGATGGTTTGGAAATTGTCAAGGAAATCCGTAAAACGAGCCACACACCGATTATCATGCTTTCAGCT
AAAGATAGTGAGTTTGATAAGGTTATCGGATTAGAAATTGGGGCAGACGACTATGTGACTAAGCCATTTTCTAACCGTGA
ATTGTTGGCACGTATTAAAGCCCACTTGCGTCGTACAGAAACGATTGAAACTGCAGTAGAAGAGAGCTCTAACTCTGGCA
AACAAGAAATTTCAATTGGTGAGTTGATTATTGTTCCGGATGCCTTTGTTGCTAAAAAACGTGGAAACGAAGTTGAGTTG
ACCCACCGTGAATTTGAGTTACTCTTCCATTTGGCAACTCATATGGGACAAGTTATGACGCGTGAACATTTGCTTGAAAC
CGTTTGGGGCTATGACTATTTTGGGGATGTTCGTACTGTGGACGTAACGATTCGTCGTCTGCGTGAAAAAATTGAAGATA
CACCTAGCCGTCCTGAATATATCTTGACGCGTCGTGGTGTCGGTTATTACATGAAGAATTATGACTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (4-113)

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (155-230)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
vicR	Streptococcus mutans UA159	84.681	100	0.847
micA	Streptococcus pneumoniae Cp1015	79.399	99.149	0.787
covR	Streptococcus salivarius strain HSISS4	44.872	99.574	0.447
covR	Lactococcus lactis subsp. lactis strain DGCC12653	45.022	98.298	0.443
scnR	Streptococcus mutans UA159	38.136	100	0.383