Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | AVT04_RS05790 | Genome accession | NZ_CP013939 |
| Coordinates | 1071162..1072118 (+) | Length | 318 a.a. |
| NCBI ID | WP_011226622.1 | Uniprot ID | A0A8D6XRE9 |
| Organism | Streptococcus thermophilus strain S9 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1066162..1077118
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVT04_RS05750 (AVT04_05750) | - | 1067059..1067421 (+) | 363 | WP_011226630.1 | DUF1033 family protein | - |
| AVT04_RS05755 (AVT04_05755) | comGA/cglA/cilD | 1067502..1068443 (+) | 942 | WP_011226629.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AVT04_RS05760 (AVT04_05760) | comYB | 1068325..1069425 (+) | 1101 | WP_148148900.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| AVT04_RS05765 (AVT04_05765) | comYC | 1069422..1069748 (+) | 327 | WP_002946126.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AVT04_RS05770 (AVT04_05770) | comYD | 1069708..1070136 (+) | 429 | WP_011226626.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| AVT04_RS05775 (AVT04_05775) | comGE | 1070108..1070401 (+) | 294 | WP_011226625.1 | competence type IV pilus minor pilin ComGE | - |
| AVT04_RS05780 (AVT04_05780) | comYF | 1070385..1070822 (+) | 438 | WP_014608742.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| AVT04_RS05785 (AVT04_05785) | comGG | 1070800..1071117 (+) | 318 | WP_002952035.1 | competence type IV pilus minor pilin ComGG | - |
| AVT04_RS05790 (AVT04_05790) | comYH | 1071162..1072118 (+) | 957 | WP_011226622.1 | class I SAM-dependent methyltransferase | Machinery gene |
| AVT04_RS05795 (AVT04_05795) | - | 1072174..1073367 (+) | 1194 | Protein_1053 | acetate kinase | - |
| AVT04_RS05800 (AVT04_05800) | - | 1073616..1073813 (+) | 198 | WP_011681682.1 | helix-turn-helix transcriptional regulator | - |
| AVT04_RS11170 (AVT04_05805) | - | 1074056..1074481 (+) | 426 | WP_041827107.1 | CPBP family intramembrane glutamic endopeptidase | - |
| AVT04_RS05810 (AVT04_05810) | - | 1074555..1075003 (+) | 449 | Protein_1056 | CAAX protease | - |
| AVT04_RS05815 (AVT04_05815) | - | 1075106..1075768 (+) | 663 | WP_011227583.1 | CPBP family intramembrane glutamic endopeptidase | - |
| AVT04_RS05820 (AVT04_05820) | proC | 1075798..1076568 (-) | 771 | WP_011226616.1 | pyrroline-5-carboxylate reductase | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 35857.00 Da Isoelectric Point: 4.7123
>NTDB_id=166338 AVT04_RS05790 WP_011226622.1 1071162..1072118(+) (comYH) [Streptococcus thermophilus strain S9]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF
Nucleotide
Download Length: 957 bp
>NTDB_id=166338 AVT04_RS05790 WP_011226622.1 1071162..1072118(+) (comYH) [Streptococcus thermophilus strain S9]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
68.889 |
99.057 |
0.682 |
| comYH | Streptococcus mutans UA140 |
68.889 |
99.057 |
0.682 |