Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   AVT04_RS02725 Genome accession   NZ_CP013939
Coordinates   522918..523361 (-) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S9     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 517918..528361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS09765 - 518928..519176 (-) 249 WP_011225562.1 hypothetical protein -
  AVT04_RS02715 (AVT04_02715) rcrQ 519332..521110 (-) 1779 WP_011226912.1 ABC transporter ATP-binding protein Regulator
  AVT04_RS02720 (AVT04_02720) rcrP 521100..522914 (-) 1815 WP_011225560.1 ABC transporter ATP-binding protein Regulator
  AVT04_RS02725 (AVT04_02725) rcrR 522918..523361 (-) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  AVT04_RS02730 (AVT04_02730) - 523553..523963 (-) 411 WP_011225559.1 peptide deformylase -
  AVT04_RS02735 (AVT04_02735) gdhA 524222..525574 (-) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  AVT04_RS02740 (AVT04_02740) - 525918..527024 (+) 1107 WP_011226911.1 AAA family ATPase -
  AVT04_RS02745 (AVT04_02745) - 527088..527840 (+) 753 WP_011226910.1 NUDIX domain-containing protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=166313 AVT04_RS02725 WP_002945408.1 522918..523361(-) (rcrR) [Streptococcus thermophilus strain S9]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=166313 AVT04_RS02725 WP_002945408.1 522918..523361(-) (rcrR) [Streptococcus thermophilus strain S9]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment