Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AVT04_RS02715 Genome accession   NZ_CP013939
Coordinates   519332..521110 (-) Length   592 a.a.
NCBI ID   WP_011226912.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S9     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 514332..526110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS02690 (AVT04_02690) - 514903..515118 (-) 216 WP_002944188.1 YozE family protein -
  AVT04_RS02695 (AVT04_02695) cvfB 515127..515984 (-) 858 WP_041827129.1 RNA-binding virulence regulatory protein CvfB -
  AVT04_RS02700 (AVT04_02700) frr 516075..516632 (-) 558 WP_011225565.1 ribosome recycling factor -
  AVT04_RS02705 (AVT04_02705) pyrH 516647..517384 (-) 738 WP_002949867.1 UMP kinase -
  AVT04_RS11010 (AVT04_02710) - 517620..518783 (-) 1164 Protein_526 sensor histidine kinase -
  AVT04_RS09765 - 518928..519176 (-) 249 WP_011225562.1 hypothetical protein -
  AVT04_RS02715 (AVT04_02715) rcrQ 519332..521110 (-) 1779 WP_011226912.1 ABC transporter ATP-binding protein Regulator
  AVT04_RS02720 (AVT04_02720) rcrP 521100..522914 (-) 1815 WP_011225560.1 ABC transporter ATP-binding protein Regulator
  AVT04_RS02725 (AVT04_02725) rcrR 522918..523361 (-) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  AVT04_RS02730 (AVT04_02730) - 523553..523963 (-) 411 WP_011225559.1 peptide deformylase -
  AVT04_RS02735 (AVT04_02735) gdhA 524222..525574 (-) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65076.16 Da        Isoelectric Point: 5.1038

>NTDB_id=166311 AVT04_RS02715 WP_011226912.1 519332..521110(-) (rcrQ) [Streptococcus thermophilus strain S9]
MENKPKTSSYKRLKPYIKGFQVPFVLAIVGAIISAVITVIGPDKLKEITNLITDGITPTKMGVIPGIDLDKVGSIALTLA
VLYAISAIVGYLQSFTVVTITQRFSQRFRTAIQKKINTVPLNYFDSHSQGDILSRVTNDVDLLGQSLSQGLGTLITSSIL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNASKESSQDFKG
LNDKLYNSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAVKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGSIFEFLEEKDMDDESVKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDKGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIATAKAVGVHHFITTLPKGYDT
YLDASVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAANGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=166311 AVT04_RS02715 WP_011226912.1 519332..521110(-) (rcrQ) [Streptococcus thermophilus strain S9]
ATGGAAAATAAGCCAAAAACATCGTCCTATAAACGTTTAAAACCCTATATTAAAGGTTTCCAAGTTCCCTTTGTCCTTGC
GATTGTTGGAGCCATTATTTCAGCAGTTATAACTGTTATTGGACCTGATAAATTAAAAGAAATCACCAATCTTATTACAG
ATGGGATTACGCCAACTAAGATGGGGGTTATTCCGGGCATCGATTTAGACAAGGTGGGCAGCATTGCTTTAACCTTGGCT
GTTTTATATGCCATTTCAGCCATTGTTGGTTACTTACAAAGTTTTACCGTTGTAACAATTACGCAACGATTTTCACAACG
TTTCCGTACAGCAATCCAAAAGAAAATCAACACCGTACCTCTTAATTATTTTGATAGTCATTCTCAAGGAGACATACTCT
CTCGTGTGACTAATGACGTTGACCTTTTGGGACAATCGCTTAGTCAGGGTCTGGGTACTCTAATTACTTCAAGCATTCTC
TTGGTAGCAGCCATTATTATGATGTTCTACTCAAATGTTACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGATT
TGTTCTAGTAGCCTTTATCATGGGCTTCTCGCAACCACTTTTTAAACGCCAACAAGAAAATTTGGCTAACATTAATGGGT
ACATTGAAGAAATCTACACAGGTCAAGCAGTTGTAACGAGCTACAATGCATCTAAAGAAAGCAGTCAAGATTTCAAGGGG
CTTAATGATAAGCTCTATAATTCAATGTGGCAATCTCAGTTTATCTCTGGTATTATGATGCCACTTATGATTTTCATCGG
TAACTTTGGTTATGTCATGGTCTGCTTGGTAGGTGCTGTTAAGGTAATTGACGGAAGCCTGACCATCGGTGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTTTCACAACCTCTTTCTCAAATTGCACAAGGGATTACACAACTCCAATCAGCAACT
GCAGCTATTGGTAGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGTCAAGACAGCTGAGTTGACAGA
TACCAAGGGTCAAGTAGTCTTTGACCATGTTTCCTTTGGTTATACTCCTGAAAAGACTATCATTCATGATTTTTCAGCTC
TTGCCAAGCCAGGACAAAAGATTGCTATTGTTGGTCCGACGGGTGCTGGTAAGACAACCATTGTTAACCTGCTTATGAAA
TTCTATAATATCGATAAAGGCCGTATCACCATTGACGGTGTGGATACGAACGACATGAAGCGTGAGACCGTCCATGATCA
ATTTTCTATGGTACTTCAAGACACTTGGCTCTTTGAAGGAACGATTCGAGATAATTTGATTTACAACCAAGAAAATATCT
CTGACGAGCAAGTTATTGCTACAGCCAAGGCCGTGGGTGTTCATCACTTCATCACCACACTTCCAAAAGGTTATGATACC
TATTTGGATGCTTCTGTTACTTTATCAGTTGGTCAGAAACAACTTTTAACCATTGCGCGTGCACTTCTTAAGGATGCCCC
TCTTCTTATCTTGGACGAGGCAACATCATCAGTTGACACACGAACAGAAGAATTGATTCAGAAGGCTATGGACAAGCTTA
TGGAGGGTCGTACATCCTTTGTCATTGCCCACCGCTTATCAACCATTCGAAATGCGGACCTCATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGAAATCATGATGAGCTCATGGCAGCAAATGGATTCTATGCTGATCTTTATAATAGTCAGTT
TACGGAAGAAGTGGCCTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(371-516)

ABC transporter transmembrane region (ABC_membrane)

(25-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.75

100

0.688

Multiple sequence alignment