Detailed information NTG0166249

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AV939_RS15235
• Genome accession: NZ_CP013932
• Coordinates: 3559211..3560131 (+)
• Length: 306 a.a.
• NCBI ID: WP_057789974.1
• Uniprot ID: A0AAW7Z115
• Organism: Alteromonas sp. Mac1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3554211..3565131

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AV939_RS15210 (AV939_15210)	ampD	3554710..3555282 (-)	573	WP_057789982.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
AV939_RS15215 (AV939_15215)	-	3555608..3556138 (+)	531	WP_138118214.1	TIGR02281 family clan AA aspartic protease	-
AV939_RS15220 (AV939_15220)	nadC	3556157..3557011 (+)	855	WP_057789980.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AV939_RS15225 (AV939_15225)	-	3557377..3557826 (+)	450	WP_057789978.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
AV939_RS15230 (AV939_15230)	pilC	3557892..3559100 (+)	1209	WP_057789976.1	type II secretion system F family protein	Machinery gene
AV939_RS15235 (AV939_15235)	pilD	3559211..3560131 (+)	921	WP_057789974.1	A24 family peptidase	Machinery gene
AV939_RS15240 (AV939_15240)	coaE	3560191..3560775 (+)	585	WP_057795957.1	dephospho-CoA kinase	-
AV939_RS15245 (AV939_15245)	zapD	3560942..3561694 (+)	753	WP_057789972.1	cell division protein ZapD	-
AV939_RS15250 (AV939_15250)	yacG	3561736..3561963 (+)	228	WP_057789970.1	DNA gyrase inhibitor YacG	-
AV939_RS15255 (AV939_15255)	-	3561974..3562852 (+)	879	WP_057789967.1	aspartoacylase	-
AV939_RS15260 (AV939_15260)	mutT	3562960..3563355 (-)	396	WP_057789965.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 306 a.a.
• Molecular weight: 34070.26 Da
• Isoelectric Point: 7.6237

>NTDB_id=166249 AV939_RS15235 WP_057789974.1 3559211..3560131(+) (pilD) [Alteromonas sp. Mac1]
MEAILLTSQLYPWLFYLFVFVVSLMVGSFLNVVIHRLPIMMENSWKQEYASYFSETDSDATNSKKNAVLDSSAQTSPETF
NLAKPDSTCPSCGHKIRAWENIPIISYLFLRGKCSNCKTPISIRYPLVELFTALTCTFAAYYFGPTPQAIWAVIFTYILI
ALIFIDLDKMLLPDQLTLPLLWLGLILSTQSIFVGPVDAIIGAAAGYLSLWSVFWLFKIVTGKEGMGYGDFKILAALGAF
TGWQGLPIIILLSSIVGAFAGIAIMLFQNKGKSLAIPFGPYLAVAGWITLFYKDTIITHYIKWALQ

Nucleotide

• Length: 921 bp

>NTDB_id=166249 AV939_RS15235 WP_057789974.1 3559211..3560131(+) (pilD) [Alteromonas sp. Mac1]
ATGGAAGCGATATTGCTTACCAGCCAATTATACCCGTGGTTATTCTACCTATTTGTTTTTGTAGTGAGTTTAATGGTAGG
AAGCTTTTTAAATGTGGTTATTCATCGCTTGCCCATTATGATGGAAAACAGTTGGAAGCAGGAATACGCCAGTTACTTTA
GTGAAACTGATAGCGATGCAACAAATAGCAAGAAAAACGCTGTTTTAGATTCTAGTGCACAAACTTCCCCTGAAACGTTT
AATTTAGCCAAGCCAGATAGCACCTGTCCTAGTTGCGGCCACAAAATTCGGGCATGGGAAAACATTCCTATTATTAGCTA
TTTATTCCTTCGCGGGAAATGTTCAAATTGTAAAACCCCTATTTCTATTCGCTATCCGTTAGTTGAGTTATTCACTGCCC
TAACCTGTACATTCGCCGCCTATTATTTTGGCCCAACACCGCAAGCAATATGGGCGGTGATATTTACTTATATTCTTATT
GCCTTAATTTTTATCGATTTAGATAAAATGTTGCTTCCTGATCAACTTACCCTACCCTTACTTTGGCTTGGTTTAATACT
TAGCACACAATCCATTTTTGTAGGCCCTGTTGACGCTATCATTGGTGCCGCCGCCGGATATTTGAGTTTATGGTCTGTAT
TCTGGTTGTTTAAAATAGTCACCGGGAAGGAAGGCATGGGATATGGCGACTTCAAAATATTGGCCGCCCTTGGTGCTTTC
ACAGGCTGGCAGGGCTTGCCTATCATCATTTTACTGTCTTCAATTGTAGGGGCTTTTGCTGGTATTGCCATTATGCTATT
CCAAAATAAAGGCAAATCATTGGCTATCCCCTTCGGGCCATATCTTGCCGTCGCAGGTTGGATAACACTCTTTTATAAAG
ACACGATTATTACCCACTATATAAAATGGGCGCTACAGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-143)

• Type IV leader peptidase family (Peptidase_A24) (154-262)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	53.22	96.405	0.513
pilD	Vibrio cholerae strain A1552	52.218	95.752	0.5
pilD	Acinetobacter nosocomialis M2	47.735	93.791	0.448
pilD	Acinetobacter baumannii D1279779	47.735	93.791	0.448
pilD	Neisseria gonorrhoeae MS11	46.021	94.444	0.435