Detailed information NTG0166214

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AV942_RS14820
• Genome accession: NZ_CP013928
• Coordinates: 3359736..3360629 (+)
• Length: 297 a.a.
• NCBI ID: WP_015067813.1
• Uniprot ID: A0AAC8XLM2
• Organism: Alteromonas mediterranea strain UM8
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3354736..3365629

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AV942_RS14795 (AV942_14805)	ampD	3355255..3355791 (-)	537	WP_015067809.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
AV942_RS14800 (AV942_14810)	-	3355967..3356485 (+)	519	WP_012519426.1	retropepsin-like aspartic protease family protein	-
AV942_RS14805 (AV942_14815)	nadC	3356505..3357359 (+)	855	WP_015067810.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AV942_RS14810 (AV942_14820)	-	3357895..3358323 (+)	429	WP_015067811.1	pilin	-
AV942_RS14815 (AV942_14825)	pilC	3358398..3359606 (+)	1209	WP_015067812.1	type II secretion system F family protein	Machinery gene
AV942_RS14820 (AV942_14830)	pilD	3359736..3360629 (+)	894	WP_015067813.1	prepilin peptidase	Machinery gene
AV942_RS14825 (AV942_14835)	coaE	3360651..3361265 (+)	615	WP_015067814.1	dephospho-CoA kinase	-
AV942_RS14830 (AV942_14840)	zapD	3361478..3362230 (+)	753	WP_015067815.1	cell division protein ZapD	-
AV942_RS14835 (AV942_14845)	yacG	3362321..3362548 (+)	228	WP_012519434.1	DNA gyrase inhibitor YacG	-
AV942_RS14840 (AV942_14850)	-	3362741..3363613 (+)	873	WP_015067816.1	aspartoacylase	-
AV942_RS14845 (AV942_14855)	mutT	3363705..3364088 (-)	384	WP_015067817.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 32795.81 Da
• Isoelectric Point: 5.2127

>NTDB_id=166214 AV942_RS14820 WP_015067813.1 3359736..3360629(+) (pilD) [Alteromonas mediterranea strain UM8]
MDAIITLSQLYPAIFYTLIFLVSLMVGSFLNVVIYRLPIMMERSWQQEYQSYFTDSDTSLDTPNAPSQDDTFNLVKPDST
CPSCGHKIRAWENIPIISYLFLRGKCAKCKVGISVRYPLVELFTAIACTFAAYQFGATPQALWAVIFTYVLVALLFIDLD
KMLLPDQLTLPLLWLGLLLSTQNIFVGTTDAIIGAAAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAFTGWQGLPV
IILLSSLVGAIAGIAIMVVQNKGKSLAIPFGPYLAVAGWLTLLFKAEIITTYLDYVL

Nucleotide

• Length: 894 bp

>NTDB_id=166214 AV942_RS14820 WP_015067813.1 3359736..3360629(+) (pilD) [Alteromonas mediterranea strain UM8]
ATGGACGCTATAATAACCCTTAGCCAACTATACCCCGCTATTTTCTATACCCTTATCTTCTTAGTAAGCTTAATGGTTGG
CAGCTTTTTAAATGTAGTGATCTATCGCTTACCCATCATGATGGAGCGCAGCTGGCAGCAGGAATACCAAAGCTACTTTA
CCGACAGTGATACCAGCTTAGATACACCTAACGCTCCATCGCAAGACGATACCTTTAATCTGGTAAAACCAGACAGCACC
TGCCCCAGCTGCGGCCACAAAATTCGCGCATGGGAGAACATTCCAATAATTAGCTACCTATTTCTAAGGGGCAAATGTGC
CAAGTGCAAGGTAGGTATTTCAGTACGCTATCCGCTGGTTGAGCTTTTCACTGCCATCGCCTGCACCTTCGCAGCCTATC
AGTTTGGCGCTACACCTCAAGCGCTTTGGGCCGTAATTTTTACCTACGTACTCGTGGCTTTGCTATTTATCGATTTAGAT
AAAATGTTGTTGCCAGACCAGCTCACGCTTCCTTTACTTTGGCTTGGGCTGCTGTTAAGTACTCAAAACATTTTTGTTGG
CACTACCGACGCCATTATTGGCGCGGCGGCAGGCTATTTAAGCTTGTGGTCGGTATATTGGTTATTTAAGCTTGTTACGG
GCAAGGAAGGCATGGGCTATGGCGATTTTAAATTGCTTGCCGCCTTAGGTGCGTTCACAGGCTGGCAAGGGCTCCCCGTT
ATCATCTTACTTTCATCATTAGTGGGCGCCATTGCAGGTATTGCTATTATGGTTGTGCAAAATAAGGGGAAGTCCTTAGC
CATCCCCTTTGGCCCTTACCTTGCTGTAGCAGGGTGGCTTACGCTGCTTTTTAAAGCTGAAATTATCACTACTTACCTTG
ATTACGTGCTTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (146-254)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-135)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.979	97.306	0.525
pilD	Vibrio campbellii strain DS40M4	53.448	97.643	0.522
pilD	Acinetobacter nosocomialis M2	50.538	93.939	0.475
pilD	Acinetobacter baumannii D1279779	50.538	93.939	0.475
pilD	Neisseria gonorrhoeae MS11	50.769	87.542	0.444