Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AWC37_RS07975 Genome accession   NZ_CP013922
Coordinates   1615953..1616372 (-) Length   139 a.a.
NCBI ID   WP_029377976.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain S170     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1610953..1621372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWC37_RS07950 (AWC37_07895) thiE 1611464..1612102 (-) 639 WP_081225106.1 thiamine phosphate synthase -
  AWC37_RS07955 (AWC37_07900) thiM 1612105..1612893 (-) 789 WP_038678895.1 hydroxyethylthiazole kinase -
  AWC37_RS07960 (AWC37_07905) thiD 1612886..1613707 (-) 822 WP_081225107.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AWC37_RS07965 (AWC37_07910) tenA 1613709..1614389 (-) 681 WP_042362325.1 thiaminase II -
  AWC37_RS07970 (AWC37_07915) - 1614831..1615526 (-) 696 WP_029377975.1 transglycosylase family protein -
  AWC37_RS07975 (AWC37_07920) ssb 1615953..1616372 (-) 420 WP_029377976.1 single-stranded DNA-binding protein Machinery gene
  AWC37_RS07980 (AWC37_07925) - 1616563..1617003 (+) 441 WP_017722099.1 YwpF-like family protein -
  AWC37_RS07985 (AWC37_07930) fabZ 1617053..1617490 (-) 438 WP_029377977.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AWC37_RS07990 (AWC37_07935) murA 1617548..1618813 (-) 1266 WP_029377978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  AWC37_RS07995 (AWC37_07940) - 1618920..1619153 (-) 234 WP_017722096.1 DUF1146 family protein -
  AWC37_RS08000 (AWC37_07945) - 1619493..1619897 (-) 405 WP_017722095.1 F0F1 ATP synthase subunit epsilon -
  AWC37_RS08005 (AWC37_07950) atpD 1619917..1621329 (-) 1413 WP_029377979.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16163.58 Da        Isoelectric Point: 6.4617

>NTDB_id=166130 AWC37_RS07975 WP_029377976.1 1615953..1616372(-) (ssb) [Staphylococcus xylosus strain S170]
MINNIVIVGRLTKDPKIYEKEGNKLATMCVAITRNYKDKDQNTICDYLYCKAVGKIANNIELYLNKGSLVGITGQMQSRK
YEKEGQMHFVSELFIETIRFMSPRSKDEVNEFHEIFPIEQVCNSNKEKNLQDNEIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=166130 AWC37_RS07975 WP_029377976.1 1615953..1616372(-) (ssb) [Staphylococcus xylosus strain S170]
ATGATTAACAACATTGTCATAGTAGGGAGATTAACCAAAGACCCTAAAATTTATGAAAAGGAGGGGAATAAATTAGCTAC
AATGTGTGTAGCGATAACAAGAAATTATAAAGATAAGGATCAAAATACTATTTGTGATTATCTCTATTGTAAGGCAGTTG
GTAAAATAGCTAATAATATCGAACTATATTTAAATAAAGGATCACTTGTGGGTATCACTGGTCAAATGCAATCACGAAAA
TATGAAAAAGAAGGGCAGATGCATTTTGTATCGGAACTTTTTATTGAAACGATTAGATTTATGTCTCCGAGAAGCAAAGA
TGAAGTTAATGAATTTCATGAAATATTCCCTATAGAGCAAGTTTGTAATTCTAATAAAGAAAAAAATTTACAAGATAATG
AAATATATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

66.355

76.978

0.511
  ssb Staphylococcus aureus MW2

65.421

76.978

0.504

Multiple sequence alignment