Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AWC33_RS11630 | Genome accession | NZ_CP013921 |
| Coordinates | 2372554..2373150 (-) | Length | 198 a.a. |
| NCBI ID | WP_003662304.1 | Uniprot ID | - |
| Organism | Lacticaseibacillus paracasei strain KL1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2357629..2382966 | 2372554..2373150 | within | 0 |
Gene organization within MGE regions
Location: 2357629..2382966
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AWC33_RS11555 (AWC33_11555) | - | 2357629..2358180 (-) | 552 | WP_016366194.1 | TetR/AcrR family transcriptional regulator | - |
| AWC33_RS11560 (AWC33_11560) | - | 2358477..2359178 (+) | 702 | WP_003568488.1 | ABC transporter ATP-binding protein | - |
| AWC33_RS11565 (AWC33_11565) | - | 2359191..2361764 (+) | 2574 | WP_003662290.1 | ABC transporter permease | - |
| AWC33_RS11570 (AWC33_11570) | - | 2361968..2363203 (+) | 1236 | WP_003577228.1 | cell wall hydrolase P40 | - |
| AWC33_RS11575 (AWC33_11575) | - | 2363727..2364029 (+) | 303 | WP_011673935.1 | hypothetical protein | - |
| AWC33_RS11580 (AWC33_11580) | - | 2364242..2364637 (+) | 396 | WP_003584064.1 | hypothetical protein | - |
| AWC33_RS11585 (AWC33_11585) | - | 2365034..2365624 (+) | 591 | Protein_2270 | TMEM175 family protein | - |
| AWC33_RS11590 (AWC33_11590) | - | 2365795..2366010 (-) | 216 | WP_016366383.1 | Blp family class II bacteriocin | - |
| AWC33_RS11595 (AWC33_11595) | - | 2366195..2366413 (-) | 219 | WP_003662299.1 | Blp family class II bacteriocin | - |
| AWC33_RS11600 (AWC33_11600) | - | 2366831..2367028 (-) | 198 | WP_016383835.1 | hypothetical protein | - |
| AWC33_RS11605 (AWC33_11605) | - | 2367125..2368141 (+) | 1017 | WP_041091277.1 | IS30 family transposase | - |
| AWC33_RS11610 (AWC33_11610) | cydB | 2368244..2369263 (-) | 1020 | WP_003662302.1 | cytochrome d ubiquinol oxidase subunit II | - |
| AWC33_RS11615 (AWC33_11615) | - | 2369256..2370734 (-) | 1479 | WP_016377483.1 | cytochrome ubiquinol oxidase subunit I | - |
| AWC33_RS11620 (AWC33_11620) | - | 2370864..2371784 (+) | 921 | WP_003574021.1 | IS30 family transposase | - |
| AWC33_RS11625 (AWC33_11625) | rpsR | 2372231..2372467 (-) | 237 | WP_003568467.1 | 30S ribosomal protein S18 | - |
| AWC33_RS11630 (AWC33_11630) | ssb | 2372554..2373150 (-) | 597 | WP_003662304.1 | single-stranded DNA-binding protein | Machinery gene |
| AWC33_RS11635 (AWC33_11635) | rpsF | 2373181..2373477 (-) | 297 | WP_003568460.1 | 30S ribosomal protein S6 | - |
| AWC33_RS11640 (AWC33_11640) | ssb | 2373605..2374036 (-) | 432 | WP_003662305.1 | single-stranded DNA-binding protein | - |
| AWC33_RS11645 (AWC33_11645) | deoC | 2374219..2374923 (+) | 705 | WP_003568456.1 | deoxyribose-phosphate aldolase | - |
| AWC33_RS11650 (AWC33_11650) | gyrA | 2375028..2377649 (-) | 2622 | WP_040166696.1 | DNA gyrase subunit A | - |
| AWC33_RS11655 (AWC33_11655) | gyrB | 2377711..2379672 (-) | 1962 | WP_003662308.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| AWC33_RS11660 (AWC33_11660) | recF | 2379925..2381040 (-) | 1116 | WP_003662310.1 | DNA replication/repair protein RecF | - |
| AWC33_RS11665 (AWC33_11665) | yaaA | 2381037..2381249 (-) | 213 | WP_003568449.1 | S4 domain-containing protein YaaA | - |
| AWC33_RS11670 (AWC33_11670) | dnaN | 2381827..2382966 (-) | 1140 | WP_003568447.1 | DNA polymerase III subunit beta | - |
Sequence
Protein
Download Length: 198 a.a. Molecular weight: 21148.91 Da Isoelectric Point: 4.9056
>NTDB_id=166099 AWC33_RS11630 WP_003662304.1 2372554..2373150(-) (ssb) [Lacticaseibacillus paracasei strain KL1]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSPNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSPNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF
Nucleotide
Download Length: 597 bp
>NTDB_id=166099 AWC33_RS11630 WP_003662304.1 2372554..2373150(-) (ssb) [Lacticaseibacillus paracasei strain KL1]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTACGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCACCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTACGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCACCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.296 |
100 |
0.596 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50 |
100 |
0.5 |