Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   AV904_RS12080 Genome accession   NZ_CP013911
Coordinates   2505560..2507188 (+) Length   542 a.a.
NCBI ID   WP_049395115.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain S167     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2500560..2512188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AV904_RS12060 (AV904_12080) - 2500579..2501568 (+) 990 WP_235601743.1 hypothetical protein -
  AV904_RS12875 - 2501751..2501900 (+) 150 WP_002434105.1 hypothetical protein -
  AV904_RS12065 (AV904_12085) cch1 2501900..2503690 (+) 1791 WP_062932014.1 cassette chromosome replicative helicase -
  AV904_RS12070 (AV904_12090) - 2503755..2504012 (+) 258 WP_049395117.1 hypothetical protein -
  AV904_RS12075 (AV904_12095) ccrA 2504190..2505539 (+) 1350 WP_049395116.1 cassette chromosome recombinase CcrA Machinery gene
  AV904_RS12080 (AV904_12100) ccrB 2505560..2507188 (+) 1629 WP_049395115.1 cassette chromosome recombinase CcrB Machinery gene
  AV904_RS12085 (AV904_12105) - 2507654..2508004 (+) 351 WP_000859157.1 SAUGI family uracil-DNA glycosylase inhibitor -
  AV904_RS12090 (AV904_12110) - 2508091..2508402 (+) 312 WP_001024803.1 DUF960 family protein -
  AV904_RS12095 (AV904_12115) - 2508417..2508923 (+) 507 WP_001092195.1 DUF1643 domain-containing protein -
  AV904_RS12100 (AV904_12120) - 2508972..2510582 (+) 1611 Protein_2405 IS1182 family transposase -
  AV904_RS12105 (AV904_12125) - 2510573..2510815 (-) 243 Protein_2406 type I restriction enzyme endonuclease domain-containing protein -
  AV904_RS12110 (AV904_12130) - 2510805..2511791 (-) 987 WP_001549960.1 beta-lactam sensor/signal transducer MecR1 -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62693.56 Da        Isoelectric Point: 9.7324

>NTDB_id=166018 AV904_RS12080 WP_049395115.1 2505560..2507188(+) (ccrB) [Staphylococcus haemolyticus strain S167]
MQQLKQKRVGIYVRVSTEIQNTEGYSINGQINQIRDYCQFHHFEVTDIYADRGISGKSMNRPELQRMLKDANEGHIDCVM
VYKTNRLSRNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANTLNHKGYVTKKGKPFSISSITYILSNPFYMGKIQFAK
YKDWNEKRRKGLNDKPIIAEGKHAPIISQALWDKVQARKKQVSQKPQVHGKGTNLLTGIVHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQDNQVDVAALNHDIAYKQQQFD
EINTKLKNLVQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKHQQNQEKPSYDTKQIAALLQRIFQNIEFMDKSQLK
ALYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=166018 AV904_RS12080 WP_049395115.1 2505560..2507188(+) (ccrB) [Staphylococcus haemolyticus strain S167]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTCCGTGTATCGACTGAAATCCAAAATACAGAAGGTTATAGTAT
TAATGGCCAAATCAATCAGATTAGAGACTACTGTCAATTTCACCATTTTGAAGTCACAGATATTTACGCTGATCGTGGTA
TCTCAGGAAAATCTATGAACCGTCCTGAGCTCCAACGTATGTTGAAGGATGCGAATGAAGGTCATATCGATTGTGTCATG
GTGTACAAAACAAACCGACTGTCACGTAATACATCAGACTTACTCAAAATTGTCGAAGATTTGCATAAGCAAAATGTCGA
ATTTTTCAGTTTGTCTGAACGTATGGAAGTCAATACTTCTTCTGGAAAACTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTTGAACGTAATAACATTGTCGAGAACGTATTCATGGGCCAAACCAGACGTGCCCAAGAAGGCTATTATCAAGGAAAT
TTACCGCTAGGCTATGACAAAATACCCGACAGTAAACACGAATTGATGATTAATCAACATGAAGCTAATATTGTAAAATA
TATTTTCGAATCTTATGCCAAAGGGCATGGCTATCGTAAAATTGCCAATACACTCAATCATAAAGGCTATGTCACTAAAA
AAGGGAAGCCTTTCAGTATAAGTTCTATTACTTATATTCTATCCAATCCCTTCTATATGGGTAAAATTCAATTTGCGAAG
TACAAAGATTGGAATGAAAAACGTCGTAAAGGACTGAATGATAAACCGATCATAGCTGAGGGTAAGCACGCCCCTATTAT
TAGCCAAGCATTATGGGATAAAGTGCAAGCACGTAAAAAGCAAGTCAGTCAAAAACCCCAAGTTCACGGTAAAGGAACTA
ATCTATTAACCGGTATCGTTCATTGTCCCCAATGCGGAGCACCTATGGCCGCGAGTAATACTACTAATACACTCAAAGAT
GGAACAAAGAAACGTATTCGCTATTATTCTTGTAGTAACTTTCGCAACAAAGGATCAAAGGTATGTTCAGCCAATAGTGT
TAGAGCTGATGTGATTGAGAAATACGTCATGGATCAAATACTTGAAATTGTCAAAAGCGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGATAATCAAGTCGATGTAGCTGCACTCAATCATGATATTGCTTATAAACAACAACAATTTGAT
GAAATTAACACTAAACTTAAAAATCTAGTTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTCAATGACATTACAAATCAAATGAATCAGCTCAAGCACCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATTCATGGATAAATCACAGCTCAAA
GCTTTGTACCTAACGGTTATTGACCGTATTGATATTCGTAAAGACGAGAATCATAAAAAACAATTCTATGTCACTCTCAA
GCTCAATAATGAAATTATTAAACAACTTTTTAATAATAACAATCTAGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACACTCTACTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Resolvase, N terminal domain (Resolvase)

(11-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

86.531

100

0.865

Multiple sequence alignment