Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   AV904_RS12075 Genome accession   NZ_CP013911
Coordinates   2504190..2505539 (+) Length   449 a.a.
NCBI ID   WP_049395116.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain S167     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2499190..2510539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AV904_RS12050 (AV904_12070) - 2499383..2499730 (+) 348 WP_002434548.1 MerR family transcriptional regulator -
  AV904_RS12055 (AV904_12075) - 2500226..2500468 (-) 243 WP_306299722.1 GNAT family N-acetyltransferase -
  AV904_RS12060 (AV904_12080) - 2500579..2501568 (+) 990 WP_235601743.1 hypothetical protein -
  AV904_RS12875 - 2501751..2501900 (+) 150 WP_002434105.1 hypothetical protein -
  AV904_RS12065 (AV904_12085) cch1 2501900..2503690 (+) 1791 WP_062932014.1 cassette chromosome replicative helicase -
  AV904_RS12070 (AV904_12090) - 2503755..2504012 (+) 258 WP_049395117.1 hypothetical protein -
  AV904_RS12075 (AV904_12095) ccrA 2504190..2505539 (+) 1350 WP_049395116.1 cassette chromosome recombinase CcrA Machinery gene
  AV904_RS12080 (AV904_12100) ccrB 2505560..2507188 (+) 1629 WP_049395115.1 cassette chromosome recombinase CcrB Machinery gene
  AV904_RS12085 (AV904_12105) - 2507654..2508004 (+) 351 WP_000859157.1 SAUGI family uracil-DNA glycosylase inhibitor -
  AV904_RS12090 (AV904_12110) - 2508091..2508402 (+) 312 WP_001024803.1 DUF960 family protein -
  AV904_RS12095 (AV904_12115) - 2508417..2508923 (+) 507 WP_001092195.1 DUF1643 domain-containing protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52545.12 Da        Isoelectric Point: 10.0045

>NTDB_id=166017 AV904_RS12075 WP_049395116.1 2504190..2505539(+) (ccrA) [Staphylococcus haemolyticus strain S167]
MKQAIGYLRQSTTKQQSLAAQKQTIKVLAEKHNIQHITFYSDKQSGRTNKRNGYQQITEQIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQTYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGIKEKARQGKLITTHAPFGYHYH
NGTFTIDTVKSPTVKAVFNYYLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
YEEAQVTRTQKQVKRKPSENQLKQKIKCPYCHSTLTNMTVRKPNHSLRYYVCPKNMNNARFVCEFKGINAQELETSVLAT
CQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLIEKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQ
NIIQQRFTLNMLYPYIDEIHITKNKTLTGIYFKNEPLNIVNQTAQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=166017 AV904_RS12075 WP_049395116.1 2504190..2505539(+) (ccrA) [Staphylococcus haemolyticus strain S167]
ATGAAACAAGCAATTGGTTACTTACGACAGAGCACTACAAAGCAACAATCCTTAGCAGCTCAAAAACAAACCATCAAGGT
ATTAGCCGAAAAACATAATATTCAACACATTACCTTTTATAGCGATAAACAATCAGGACGTACTAATAAGCGGAATGGTT
ATCAACAAATTACTGAACAGATTCAACAGGGACAATGTGACGTATTATGTTGCTATCGTCTAAATCGACTTCATCGTAAT
TTGAAAAATGCATTAAAGCTCATGAAATTATGTCAAACGTATCATGTTCATATCTTAAGCGTTCATGATGGCTACTTCGA
CATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAACTAGAATCTGATAATATAGGCGAAC
AAGTCAAAAATGGAATCAAAGAAAAAGCGAGACAAGGTAAACTAATTACAACACATGCACCCTTTGGGTATCACTATCAT
AATGGTACTTTCACAATAGACACAGTAAAATCACCAACAGTAAAAGCTGTGTTCAATTATTACCTTCAAGGTTATGGTTA
TAAAAAAATTGCGCAATACTTAGAAGCTGATGATAAATTCATTAATCGCAAGCCCTATCAAGTGCGTAATATTATCCTTA
ACCCTAATTACTGTGGCCGTGTTATCAATCAATACGGACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTACCCGAACTCAGAAACAAGTCAAACGTAAGCCGTCAGAAAATCAACTCAAACAAAAAATCAA
ATGTCCCTATTGCCATTCGACACTCACAAACATGACCGTCCGAAAACCAAATCATTCATTGCGTTACTATGTCTGTCCGA
AAAATATGAATAACGCTCGCTTTGTTTGTGAATTTAAAGGAATCAACGCACAAGAATTAGAAACAAGTGTTTTAGCGACT
TGTCAGGACTTCTTTCAAAATCAACAGCTCTATTCAAAAATAAACCATACTATTCAACAACGACTCAAAAGACAAAGAGA
TATAGAAACTAAAACTACACTCAATCACGAGCAGCTGATAGAAAAATTAGCCCAAGACAAAATTGATGCAGAAACGTTCA
GAGAACAAACGCAATCATTACGTCAGCAATCAAAACCTATATCATCAATCAGTACGTATCAAATTCGAAAAGCTTTCCAA
AATATCATACAACAACGTTTCACGTTAAACATGTTGTACCCTTACATTGATGAAATTCATATTACCAAAAATAAAACACT
TACGGGTATCTATTTCAAAAATGAGCCCTTAAACATCGTCAATCAAACGGCGCAATCATCGATTGCTTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(170-249)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

93.764

100

0.938
  ccrA Staphylococcus aureus N315

75.947

100

0.759

Multiple sequence alignment