Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   A7J08_RS03315 Genome accession   NZ_CP017088
Coordinates   648975..649571 (+) Length   198 a.a.
NCBI ID   WP_024386938.1    Uniprot ID   -
Organism   Streptococcus suis strain SRD478     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 643975..654571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J08_RS03300 (A7J08_03165) vicX 644353..645156 (+) 804 WP_029172537.1 MBL fold metallo-hydrolase Regulator
  A7J08_RS10560 - 645414..646250 (+) 837 WP_235443465.1 ATP-binding cassette domain-containing protein -
  A7J08_RS10565 (A7J08_03175) - 646290..646799 (+) 510 WP_235443466.1 ATP-binding cassette domain-containing protein -
  A7J08_RS03310 (A7J08_03180) pbp2b 646891..648966 (+) 2076 WP_053867002.1 penicillin-binding protein PBP2B -
  A7J08_RS03315 (A7J08_03185) recR 648975..649571 (+) 597 WP_024386938.1 recombination mediator RecR Machinery gene
  A7J08_RS03320 (A7J08_03190) - 649676..650722 (+) 1047 WP_053867003.1 D-alanine--D-alanine ligase -
  A7J08_RS03325 (A7J08_03195) - 650809..651189 (+) 381 WP_053867004.1 OsmC family protein -
  A7J08_RS03330 (A7J08_03200) murF 651318..652679 (+) 1362 WP_053867005.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  A7J08_RS03335 (A7J08_03205) - 652691..653230 (+) 540 WP_053867006.1 Crp/Fnr family transcriptional regulator -
  A7J08_RS03340 (A7J08_03210) - 653324..653920 (+) 597 WP_053867007.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21679.77 Da        Isoelectric Point: 4.4757

>NTDB_id=166012 A7J08_RS03315 WP_024386938.1 648975..649571(+) (recR) [Streptococcus suis strain SRD478]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSVCGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=166012 A7J08_RS03315 WP_024386938.1 648975..649571(+) (recR) [Streptococcus suis strain SRD478]
ATGCTTTACCCTACACCTATTGCTAAGTTAATTGATAGTTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAATTTGCTAAAAATTTATTGGCAGCTAAGCGAGACC
TATCTTATTGCTCCGTTTGTGGTAATCTGACAGATCAGGACCCCTGTGCCATTTGCCAGGACTCAACGCGAGACCAATCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCTTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATCGGACCAGATGATATTAATTTGAAAACCCTCCTCACTCGCCTGATGGATA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAGGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAACCGCACAGAGCTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.374

100

0.874
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485