Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   A7J08_RS01320 Genome accession   NZ_CP017088
Coordinates   243547..244260 (+) Length   237 a.a.
NCBI ID   WP_024402907.1    Uniprot ID   -
Organism   Streptococcus suis strain SRD478     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 238547..249260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J08_RS01310 (A7J08_01285) treC 239612..241237 (-) 1626 WP_148115639.1 alpha,alpha-phosphotrehalase -
  A7J08_RS01315 (A7J08_01290) treP 241318..243312 (-) 1995 WP_053866905.1 PTS system trehalose-specific EIIBC component -
  A7J08_RS01320 (A7J08_01295) treR 243547..244260 (+) 714 WP_024402907.1 trehalose operon repressor Regulator
  A7J08_RS01325 (A7J08_01300) - 244318..244629 (+) 312 WP_053866906.1 hypothetical protein -
  A7J08_RS01330 (A7J08_01305) - 244626..245174 (+) 549 WP_053866907.1 CvpA family protein -
  A7J08_RS01335 (A7J08_01310) mutS/mutS2 245838..248171 (+) 2334 WP_148115640.1 endonuclease MutS2 Machinery gene
  A7J08_RS01340 (A7J08_01315) - 248337..248726 (+) 390 WP_053866896.1 DUF1310 family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=165993 A7J08_RS01320 WP_024402907.1 243547..244260(+) (treR) [Streptococcus suis strain SRD478]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQELYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=165993 A7J08_RS01320 WP_024402907.1 243547..244260(+) (treR) [Streptococcus suis strain SRD478]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAGAGCTCCCTACC
GACAGAACAACAGCTCCAGGAACTCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCTTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515

Multiple sequence alignment