Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   AV904_RS03450 Genome accession   NZ_CP013911
Coordinates   701671..702255 (-) Length   194 a.a.
NCBI ID   WP_011276196.1    Uniprot ID   A0A2A1KAP4
Organism   Staphylococcus haemolyticus strain S167     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 696671..707255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AV904_RS03420 (AV904_03430) - 697435..698037 (-) 603 WP_011276203.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  AV904_RS12395 - 698054..698230 (-) 177 WP_011276202.1 YkvS family protein -
  AV904_RS03425 (AV904_03435) - 698431..699420 (+) 990 WP_016931368.1 lipoate--protein ligase -
  AV904_RS12400 - 699468..699569 (-) 102 WP_076684686.1 Ltp family lipoprotein -
  AV904_RS03430 (AV904_03440) - 699639..700214 (-) 576 WP_011276200.1 hypothetical protein -
  AV904_RS03435 (AV904_03445) - 700285..700758 (-) 474 WP_053020180.1 PH domain-containing protein -
  AV904_RS03450 (AV904_03460) comK/comK1 701671..702255 (-) 585 WP_011276196.1 competence protein ComK Regulator
  AV904_RS03455 (AV904_03465) - 702469..702687 (+) 219 WP_011276195.1 IDEAL domain-containing protein -
  AV904_RS12930 - 702764..702865 (-) 102 WP_011276194.1 SAR1012 family small protein -
  AV904_RS03460 (AV904_03470) - 702944..703174 (-) 231 WP_011276193.1 NINE protein -
  AV904_RS03465 (AV904_03475) - 703361..703915 (+) 555 WP_016931371.1 GNAT family N-acetyltransferase -
  AV904_RS03470 (AV904_03480) - 704014..704952 (-) 939 WP_016931372.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  AV904_RS03475 (AV904_03485) - 705132..706499 (+) 1368 WP_053021637.1 isochorismate synthase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 23002.43 Da        Isoelectric Point: 9.2942

>NTDB_id=165993 AV904_RS03450 WP_011276196.1 701671..702255(-) (comK/comK1) [Staphylococcus haemolyticus strain S167]
MTNISQSQNTVYIIRKGDMIIKPVIDDYEQTKGSEIWKYDSTIVSSPFKTQKIVERSCKFYGNSYISKKSETQRIAGITS
KPPILLTPLFPTYFFPTHSDRLEENMWINMHYVHEIKPLKNRKCKIIFANHQTLTLNVSYHSIWHQYSNCIFYYYMVDKQ
SRMKSNNPEMPIDYEKTTLNIFEALSHYSLLQDK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=165993 AV904_RS03450 WP_011276196.1 701671..702255(-) (comK/comK1) [Staphylococcus haemolyticus strain S167]
ATGACAAATATTTCTCAAAGCCAAAATACTGTATATATTATTCGAAAAGGAGATATGATAATCAAACCCGTCATTGATGA
TTATGAGCAAACAAAAGGATCAGAAATATGGAAATATGATTCCACAATAGTTTCAAGCCCATTCAAAACTCAAAAAATCG
TCGAACGCTCATGTAAATTTTATGGTAATAGCTATATTAGTAAGAAATCCGAAACACAACGAATTGCCGGCATTACTAGT
AAACCACCTATTTTATTGACTCCTCTCTTCCCCACTTATTTTTTCCCTACGCATTCAGACCGTTTAGAAGAAAACATGTG
GATTAATATGCATTATGTACATGAAATTAAACCTCTTAAAAATCGAAAATGTAAAATTATTTTTGCAAATCATCAAACAT
TAACACTTAATGTTTCCTACCACAGTATTTGGCACCAATACTCTAACTGCATTTTTTATTATTACATGGTCGATAAACAA
TCTCGTATGAAGTCAAACAATCCAGAAATGCCAATAGATTATGAGAAAACGACTTTAAATATTTTCGAAGCACTTTCACA
TTATTCACTATTACAAGATAAATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(11-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A1KAP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

68.617

96.907

0.665
  comK/comK1 Staphylococcus aureus N315

68.617

96.907

0.665

Multiple sequence alignment