Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AUC44_RS15995 Genome accession   NZ_CP013910
Coordinates   3261929..3262969 (+) Length   346 a.a.
NCBI ID   WP_062159593.1    Uniprot ID   -
Organism   Deinococcus actinosclerus strain BM2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3256929..3267969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUC44_RS15975 (AUC44_15955) fumC 3257544..3258938 (+) 1395 WP_062159589.1 class II fumarate hydratase -
  AUC44_RS15980 (AUC44_15960) - 3259195..3259605 (+) 411 WP_062159590.1 hypothetical protein -
  AUC44_RS15985 (AUC44_15965) - 3259735..3260394 (+) 660 WP_062159591.1 response regulator transcription factor -
  AUC44_RS15990 (AUC44_15970) - 3260394..3261827 (+) 1434 WP_062159592.1 sensor histidine kinase -
  AUC44_RS15995 (AUC44_15975) dprA 3261929..3262969 (+) 1041 WP_062159593.1 DNA-processing protein DprA Machinery gene
  AUC44_RS16000 (AUC44_15980) - 3262976..3263263 (-) 288 WP_062159594.1 hypothetical protein -
  AUC44_RS16005 (AUC44_15985) - 3263282..3264238 (+) 957 WP_062159595.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 35663.01 Da        Isoelectric Point: 6.7583

>NTDB_id=165986 AUC44_RS15995 WP_062159593.1 3261929..3262969(+) (dprA) [Deinococcus actinosclerus strain BM2]
MLALRFCAQLGPRRIEALRTYFGSAAGAWQAPLRDLREVPGLDARAAQAVGTPAALTRADQELARVAQEDVTLLLRGLPG
YPAALDALGDPPAALWVRGPLPELPTVPRAIGIVGTRAASPHAQAFTRMLAADLARAGVVVVSGLARGIDTAAHGAAVEA
GGVSIGVLGSAVNRVYPGENARLAAQLTLISEYPLDTGPAQHHFPTRNRLIAALSAGTVVVEGERKSGSLITATHALECG
RTVFAVPGRAGDPRAAGPHALLRDGAVLTEGAADLLTELGWGSVPAAPLPDLPPEQTRVLAALTGPVTLDDLVTATGLPL
PDVQTALVMLNLLGLAEEVGGRWVRR

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=165986 AUC44_RS15995 WP_062159593.1 3261929..3262969(+) (dprA) [Deinococcus actinosclerus strain BM2]
CTGCTGGCCCTGCGCTTCTGTGCGCAGCTCGGCCCGCGCCGGATCGAGGCGCTGCGGACGTATTTCGGGTCGGCGGCCGG
CGCGTGGCAGGCGCCGCTGCGGGACCTGCGCGAGGTGCCGGGCCTGGACGCCCGCGCCGCGCAGGCCGTCGGGACCCCGG
CCGCCCTCACCCGCGCCGATCAGGAACTGGCCCGGGTGGCGCAGGAGGACGTGACGCTGCTGCTGCGCGGCCTGCCCGGG
TACCCGGCGGCGCTGGACGCGCTGGGCGACCCGCCCGCCGCCCTGTGGGTGCGCGGCCCGCTGCCGGAGCTGCCGACCGT
GCCCCGCGCCATCGGGATCGTGGGCACCCGCGCCGCCAGTCCGCACGCGCAGGCGTTCACGCGGATGCTCGCGGCGGACC
TCGCCCGCGCCGGGGTGGTCGTCGTGAGCGGACTGGCACGCGGGATCGACACGGCCGCCCACGGCGCGGCCGTCGAGGCC
GGTGGGGTCAGTATCGGCGTGCTGGGCAGCGCCGTGAACCGCGTGTACCCCGGCGAGAACGCCCGGCTGGCCGCGCAGCT
CACGCTGATCAGCGAGTACCCGCTGGATACTGGACCCGCGCAGCACCACTTCCCGACCCGCAACCGCCTGATCGCCGCGC
TGAGCGCCGGGACGGTCGTCGTGGAGGGCGAACGGAAATCCGGGTCGCTGATCACCGCCACGCACGCCCTGGAATGCGGG
CGGACGGTGTTCGCGGTGCCGGGCCGCGCCGGGGACCCGCGCGCCGCCGGACCGCACGCCCTGCTCCGCGACGGCGCGGT
GCTCACCGAGGGGGCCGCCGACCTCCTGACCGAACTGGGCTGGGGCAGCGTTCCGGCCGCCCCGCTGCCGGACCTGCCGC
CCGAGCAGACGCGGGTACTGGCGGCCCTGACGGGACCCGTCACGCTGGACGACCTCGTGACCGCCACGGGTCTGCCGCTG
CCGGACGTGCAGACGGCGCTGGTCATGCTGAACCTGCTGGGCCTCGCCGAGGAGGTCGGGGGCCGCTGGGTGCGGCGCTG
A

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(285-341)

DNA recombination-mediator protein A (DNA_processg_A)

(67-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

67.521

100

0.685
  dprA Legionella pneumophila strain ERS1305867

35.493

100

0.364
  dprA Glaesserella parasuis strain SC1401

33.422

100

0.361

Multiple sequence alignment