Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   A7J08_RS00905 Genome accession   NZ_CP017088
Coordinates   147261..147668 (+) Length   135 a.a.
NCBI ID   WP_053866668.1    Uniprot ID   -
Organism   Streptococcus suis strain SRD478     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 142261..152668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J08_RS00880 (A7J08_00875) - 143507..143881 (+) 375 WP_024385120.1 DUF1033 family protein -
  A7J08_RS00885 (A7J08_00880) - 143915..144826 (-) 912 Protein_136 S66 peptidase family protein -
  A7J08_RS00890 (A7J08_00885) comGA 145098..146048 (+) 951 WP_053867353.1 competence type IV pilus ATPase ComGA Machinery gene
  A7J08_RS00895 (A7J08_00890) comGB 145960..146997 (+) 1038 WP_238600014.1 competence type IV pilus assembly protein ComGB Machinery gene
  A7J08_RS00900 (A7J08_00895) comGC 146999..147280 (+) 282 WP_053866667.1 competence type IV pilus major pilin ComGC Machinery gene
  A7J08_RS00905 (A7J08_00900) comGD 147261..147668 (+) 408 WP_053866668.1 competence type IV pilus minor pilin ComGD Machinery gene
  A7J08_RS00910 (A7J08_00905) comGE 147640..147933 (+) 294 WP_053866669.1 competence type IV pilus minor pilin ComGE Machinery gene
  A7J08_RS00915 (A7J08_00910) comGF/cglF 147920..148354 (+) 435 WP_053866670.1 competence type IV pilus minor pilin ComGF Machinery gene
  A7J08_RS00920 (A7J08_00915) comGG 148332..148745 (+) 414 WP_053866671.1 competence type IV pilus minor pilin ComGG -
  A7J08_RS00925 (A7J08_00920) comGH 148795..149748 (+) 954 WP_053866672.1 class I SAM-dependent methyltransferase Machinery gene
  A7J08_RS00930 (A7J08_00925) - 149798..150985 (+) 1188 WP_053866673.1 acetate kinase -
  A7J08_RS00940 (A7J08_00930) - 151299..151850 (+) 552 WP_053866674.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15396.60 Da        Isoelectric Point: 9.9319

>NTDB_id=165986 A7J08_RS00905 WP_053866668.1 147261..147668(+) (comGD) [Streptococcus suis strain SRD478]
MLRRKNKAFTLFESLLTLFVISFLAISLSGTVQTAFRSVQEEIFLWEFEAIYRDSQKLAASSHQTVSLAIGRQEVTNGYQ
AVEIPRSVEVLEGKTITFEENGGNSSLTKIRFRLSRKTVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=165986 A7J08_RS00905 WP_053866668.1 147261..147668(+) (comGD) [Streptococcus suis strain SRD478]
ATGCTACGGCGAAAAAATAAGGCTTTTACCCTGTTCGAAAGCCTGCTGACCTTATTTGTCATCAGCTTTCTGGCAATCAG
CCTATCGGGAACGGTACAAACGGCCTTTCGGTCTGTTCAGGAAGAGATTTTTCTCTGGGAATTTGAAGCCATCTATAGAG
ACAGTCAGAAATTGGCAGCCAGTTCCCACCAAACAGTGAGTCTAGCTATCGGTAGGCAGGAGGTTACAAATGGTTATCAG
GCTGTAGAGATACCCAGAAGTGTAGAAGTATTGGAAGGGAAGACCATCACATTTGAAGAAAATGGTGGAAATTCTTCTCT
GACCAAGATTCGTTTTCGGCTTAGTCGAAAGACAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA159

48.837

95.556

0.467
  comGD Streptococcus mutans UA140

48.837

95.556

0.467
  comGD Streptococcus gordonii str. Challis substr. CH1

48.031

94.074

0.452
  comGD/cglD Streptococcus pneumoniae R6

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae TIGR4

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae Rx1

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae D39

45.736

95.556

0.437
  comGD/cglD Streptococcus mitis NCTC 12261

44.961

95.556

0.43
  comGD/cglD Streptococcus mitis SK321

44.961

95.556

0.43

Multiple sequence alignment