Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   A7J08_RS00225 Genome accession   NZ_CP017088
Coordinates   31594..32376 (+) Length   260 a.a.
NCBI ID   WP_053867384.1    Uniprot ID   -
Organism   Streptococcus suis strain SRD478     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 26594..37376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J08_RS00200 (A7J08_00195) mreC 26610..27446 (+) 837 WP_053867122.1 rod shape-determining protein MreC -
  A7J08_RS00205 (A7J08_00200) mreD 27448..27951 (+) 504 WP_268768065.1 rod shape-determining protein MreD -
  A7J08_RS00210 (A7J08_00205) pcsB 28036..29271 (+) 1236 WP_053867120.1 peptidoglycan hydrolase PcsB -
  A7J08_RS00215 (A7J08_00210) - 29374..30342 (+) 969 WP_053867119.1 ribose-phosphate diphosphokinase -
  A7J08_RS00220 (A7J08_00215) - 30429..31607 (+) 1179 WP_148115616.1 pyridoxal phosphate-dependent aminotransferase -
  A7J08_RS00225 (A7J08_00220) recO 31594..32376 (+) 783 WP_053867384.1 DNA repair protein RecO Machinery gene
  A7J08_RS00230 (A7J08_00225) plsX 32373..33380 (+) 1008 WP_044751970.1 phosphate acyltransferase PlsX -
  A7J08_RS00235 (A7J08_00230) - 33373..33621 (+) 249 WP_014637254.1 phosphopantetheine-binding protein -
  A7J08_RS00240 (A7J08_00235) purC 33739..34446 (+) 708 WP_053867393.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30452.01 Da        Isoelectric Point: 5.4154

>NTDB_id=165972 A7J08_RS00225 WP_053867384.1 31594..32376(+) (recO) [Streptococcus suis strain SRD478]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKS
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMELGLDYEILTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPDMKRKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=165972 A7J08_RS00225 WP_053867384.1 31594..32376(+) (recO) [Streptococcus suis strain SRD478]
ATGGAACGAATTGAAACTAGGGGATTAGTCCTTTACAATCGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
AGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCTTCTAAGTCCAAGTTGGTAGCTTCTATCCAACCGTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCATTTAAGAGT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACATATATCTTGGCCTTGGCAGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCCCTCTTTGCATTTTTGGTCAAGACCTTGGATTTGATGGAGTTGGGTTTGGACTATGAAATTTTGACCAATA
TCTTTGAAATTCAGCTCTTGGGACGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAACGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGATA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.323

96.538

0.669

Multiple sequence alignment