Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MTVDSCj16_RS06155 Genome accession   NZ_CP017033
Coordinates   1158667..1159218 (+) Length   183 a.a.
NCBI ID   WP_002853013.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain MTVDSCj16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1153667..1164218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTVDSCj16_RS06130 (MTVDSCj16_1218) rseP 1153839..1154945 (+) 1107 WP_052798709.1 RIP metalloprotease RseP -
  MTVDSCj16_RS06135 (MTVDSCj16_1219) - 1154938..1155798 (+) 861 WP_052845933.1 VirK family antimicrobial peptide resistance protein -
  MTVDSCj16_RS06140 (MTVDSCj16_1220) - 1155791..1156792 (-) 1002 WP_052845932.1 TIM barrel protein -
  MTVDSCj16_RS06145 (MTVDSCj16_1221) - 1156789..1158063 (-) 1275 WP_002872525.1 MFS transporter -
  MTVDSCj16_RS06150 (MTVDSCj16_1222) rpsF 1158281..1158658 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  MTVDSCj16_RS06155 (MTVDSCj16_1223) ssb 1158667..1159218 (+) 552 WP_002853013.1 single-stranded DNA-binding protein Machinery gene
  MTVDSCj16_RS06160 (MTVDSCj16_1224) rpsR 1159229..1159489 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  MTVDSCj16_RS06165 (MTVDSCj16_1225) lon 1159550..1161925 (-) 2376 WP_069360616.1 endopeptidase La -
  MTVDSCj16_RS06170 (MTVDSCj16_1226) - 1161942..1162589 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  MTVDSCj16_RS06175 (MTVDSCj16_1227) fliW 1162750..1163139 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  MTVDSCj16_RS06180 (MTVDSCj16_1228) proC 1163139..1163870 (+) 732 WP_069360617.1 pyrroline-5-carboxylate reductase Machinery gene
  MTVDSCj16_RS06185 (MTVDSCj16_1229) ctsT 1163867..1164169 (+) 303 WP_002855822.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20710.60 Da        Isoelectric Point: 5.0431

>NTDB_id=165839 MTVDSCj16_RS06155 WP_002853013.1 1158667..1159218(+) (ssb) [Campylobacter jejuni subsp. jejuni strain MTVDSCj16]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=165839 MTVDSCj16_RS06155 WP_002853013.1 1158667..1159218(+) (ssb) [Campylobacter jejuni subsp. jejuni strain MTVDSCj16]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361