Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MTVDSCj07_RS05305 Genome accession   NZ_CP017031
Coordinates   1007786..1008334 (+) Length   182 a.a.
NCBI ID   WP_002890071.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain MTVDSCj07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1002786..1013334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTVDSCj07_RS05270 (MTVDSCj07_1010) - 1002976..1003401 (+) 426 WP_002890069.1 GNAT family N-acetyltransferase -
  MTVDSCj07_RS05275 (MTVDSCj07_1011) - 1003465..1004085 (+) 621 WP_002856358.1 NAD(P)H-dependent oxidoreductase -
  MTVDSCj07_RS05280 (MTVDSCj07_1012) - 1004085..1004690 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  MTVDSCj07_RS05285 (MTVDSCj07_1013) pgsA 1004815..1005351 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MTVDSCj07_RS05290 (MTVDSCj07_1014) rseP 1005348..1006454 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  MTVDSCj07_RS05295 (MTVDSCj07_1015) - 1006447..1007313 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  MTVDSCj07_RS05300 (MTVDSCj07_1016) rpsF 1007400..1007774 (+) 375 WP_002890070.1 30S ribosomal protein S6 -
  MTVDSCj07_RS05305 (MTVDSCj07_1017) ssb 1007786..1008334 (+) 549 WP_002890071.1 single-stranded DNA-binding protein Machinery gene
  MTVDSCj07_RS05310 (MTVDSCj07_1018) rpsR 1008345..1008605 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  MTVDSCj07_RS05315 (MTVDSCj07_1019) lon 1008665..1011040 (-) 2376 WP_002853487.1 endopeptidase La -
  MTVDSCj07_RS05320 (MTVDSCj07_1020) - 1011057..1011704 (-) 648 WP_069358670.1 outer membrane protein assembly factor BamD -
  MTVDSCj07_RS05325 (MTVDSCj07_1021) fliW 1011865..1012254 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  MTVDSCj07_RS05330 (MTVDSCj07_1022) proC 1012254..1012985 (+) 732 WP_002864259.1 pyrroline-5-carboxylate reductase Machinery gene
  MTVDSCj07_RS05335 (MTVDSCj07_1023) ctsT 1012982..1013284 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20594.53 Da        Isoelectric Point: 5.0431

>NTDB_id=165748 MTVDSCj07_RS05305 WP_002890071.1 1007786..1008334(+) (ssb) [Campylobacter jejuni subsp. jejuni strain MTVDSCj07]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLAKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNVPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=165748 MTVDSCj07_RS05305 WP_002890071.1 1007786..1008334(+) (ssb) [Campylobacter jejuni subsp. jejuni strain MTVDSCj07]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTGCAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGTTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363