NTDB

Overview

Name	radC	Type	Machinery gene
Locus tag	FORC55_RS13635	Genome accession	NZ_CP016987
Coordinates	2876520..2877194 (-)	Length	224 a.a.
NCBI ID	WP_000053459.1	Uniprot ID	A0AAU8WKI7
Organism	Vibrio cholerae strain FORC_055 isolate MFDS
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2871520..2882194

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC55_RS13600 (FORC55_2558)	-	2871700..2872479 (+)	780	WP_000042990.1	glycosyltransferase family 2 protein	-
FORC55_RS13605 (FORC55_2559)	-	2872541..2873578 (-)	1038	WP_096070755.1	glycosyltransferase family 9 protein	-
FORC55_RS13610 (FORC55_2560)	coaD	2873689..2874183 (+)	495	WP_000078886.1	pantetheine-phosphate adenylyltransferase	-
FORC55_RS13615 (FORC55_2561)	mutM	2874280..2875089 (-)	810	WP_001963522.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
FORC55_RS13620 (FORC55_2562)	-	2875099..2875581 (-)	483	WP_001266251.1	hypothetical protein	-
FORC55_RS13625 (FORC55_2563)	rpmG	2875808..2875975 (-)	168	WP_001051801.1	50S ribosomal protein L33	-
FORC55_RS13630 (FORC55_2564)	rpmB	2875989..2876225 (-)	237	WP_000091952.1	50S ribosomal protein L28	-
FORC55_RS13635 (FORC55_2565)	radC	2876520..2877194 (-)	675	WP_000053459.1	RadC family protein	Machinery gene
FORC55_RS13640 (FORC55_2566)	-	2877306..2878985 (-)	1680	WP_032470437.1	methyl-accepting chemotaxis protein	-
FORC55_RS13645 (FORC55_2567)	coaBC	2879168..2880367 (+)	1200	WP_001190956.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
FORC55_RS13650	-	2880433..2880570 (-)	138	WP_001889830.1	hypothetical protein	-
FORC55_RS13655 (FORC55_2568)	slmA	2880526..2881116 (+)	591	WP_000918350.1	nucleoid occlusion factor SlmA	-
FORC55_RS13660 (FORC55_2569)	-	2881122..2882069 (+)	948	WP_000076199.1	Kdo(2)-lipid IV(A) acyltransferase	-

Sequence

Protein

Download Length: 224 a.a. Molecular weight: 25256.06 Da Isoelectric Point: 7.5163

                                >NTDB_id=165633 FORC55_RS13635 WP_000053459.1 2876520..2877194(-) (radC) [Vibrio cholerae strain FORC_055 isolate MFDS]

MSLKELPTESMPREKLLQRGPQSLSDAELLAIFLRTGTHGMNVLALADLLLRDFGSLRALFCASKEQFCRHKGLGEAKFV

QLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDRQREAFYILFLDNQHRVIRDEILFEGTIDAASVYPREVVKR

ALHHNAAAVILAHNHPSGVAEPSQADRRITDRLRDALGLVEIRVLDHFVVGDGEVVSFAERGWI

Nucleotide

Download Length: 675 bp

                                >NTDB_id=165633 FORC55_RS13635 WP_000053459.1 2876520..2877194(-) (radC) [Vibrio cholerae strain FORC_055 isolate MFDS]

ATGAGTCTGAAAGAGTTACCCACCGAATCGATGCCGCGCGAAAAATTGCTGCAACGCGGCCCGCAATCATTAAGTGATGC

GGAATTGCTGGCGATTTTCCTACGTACAGGCACGCATGGTATGAATGTGCTCGCCTTGGCGGATCTGCTGCTGCGCGATT

TTGGATCACTGCGCGCACTGTTCTGTGCCTCCAAGGAGCAGTTTTGTCGCCACAAAGGGTTGGGCGAAGCCAAATTTGTC

CAGTTACAAGCGGTATTGGAGATGACGCAGCGTTATCTCGCTGAAACCTTAAAGCGCGGTGATGCCCTCACCAGTCCGCA

GCAAACCAAACTTTATTTATCGAGCGTTTTGCGCGATCGCCAACGAGAAGCCTTCTATATATTGTTTTTGGATAACCAAC

ATCGTGTCATTCGTGATGAGATTTTATTTGAAGGGACGATTGATGCGGCGAGCGTTTACCCACGAGAAGTGGTTAAGCGG

GCGCTGCACCATAATGCGGCTGCGGTAATACTGGCGCACAACCATCCTTCTGGGGTTGCTGAACCGAGTCAAGCCGATCG

AAGGATCACCGATCGCCTGCGTGATGCACTCGGTTTGGTTGAGATTCGCGTACTGGATCATTTTGTTGTCGGTGATGGGG

AAGTGGTCTCTTTTGCTGAACGCGGCTGGATATAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-79)

RadC-like JAB domain (RadC)

(104-222)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0AAU8WKI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radC	Haemophilus influenzae Rd KW20	53.704	96.429	0.518
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	37.946	100	0.379

Detailed information NTG0165633