Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FORC55_RS10740 Genome accession   NZ_CP016987
Coordinates   2280770..2281495 (+) Length   241 a.a.
NCBI ID   WP_000877198.1    Uniprot ID   Q9KU21
Organism   Vibrio cholerae strain FORC_055 isolate MFDS     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2275770..2286495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC55_RS10725 (FORC55_2028) clpC 2276218..2278791 (-) 2574 WP_001235058.1 ATP-dependent chaperone ClpB Regulator
  FORC55_RS10730 (FORC55_2029) pgeF 2278916..2279638 (-) 723 WP_001963985.1 peptidoglycan editing factor PgeF -
  FORC55_RS10735 (FORC55_2030) rluD 2279641..2280615 (-) 975 WP_000941105.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FORC55_RS10740 (FORC55_2031) comL 2280770..2281495 (+) 726 WP_000877198.1 outer membrane protein assembly factor BamD Machinery gene
  FORC55_RS10745 (FORC55_2032) hpf 2281897..2282223 (+) 327 WP_000700176.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FORC55_RS10750 (FORC55_2033) pheA 2282462..2283637 (+) 1176 WP_000130282.1 prephenate dehydratase -
  FORC55_RS10755 (FORC55_2034) - 2283821..2284861 (+) 1041 WP_000595734.1 polyamine ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27875.68 Da        Isoelectric Point: 5.1660

>NTDB_id=165613 FORC55_RS10740 WP_000877198.1 2280770..2281495(+) (comL) [Vibrio cholerae strain FORC_055 isolate MFDS]
MKYQTLSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAED
AQRRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=165613 FORC55_RS10740 WP_000877198.1 2280770..2281495(+) (comL) [Vibrio cholerae strain FORC_055 isolate MFDS]
ATGAAATACCAGACTTTATCAGGCCTACTCGCGTTATCCCTGTTATTTGGTTGCTCTAGCAGCCCAGATGTGGTGCCAGA
TGTACCGCCATCACAGCTGTACTCTGAAGCGCAAACCGCTCTACAAAGCGGAACGTGGTTAACCGCTATCGAAAAACTAG
AGGCGCTCGATTCACGCTATCCATTTGGTGCTTATTCAGAGCAAGTACAGCTCGATCTGATTTATGCCTACTACAAAAAT
GATGATCTGGCCCTTGGCCTCGCGACCATCGAACGTTTTACACGCCTTAATCCAACCCATGAAAAAATGGATTGGGTACT
CTACATGCGCGGTTTGACGCACATGGCGCAAGATCGCAACTTCATGCATGACCTGTTTAATATCGATCGCCGTGACCGCG
ATCCTGAACCCGTGAAAGCAGCCTTTGCGGATTTTAAGAAACTGCTCCAGCGTTACCCAAACAGCCCATACGCAGAAGAT
GCGCAGCGTCGAATGTTTGCACTCAAGAACCGTTTAGCGGAATACGATTTAGCGACCGCAGATTTCTACCTGCGCCGTGA
AGCATGGATTGCAGCGATTAATCGCACTCAAGAGTTACAAAAAACCTATCCAGATACCGAAGCGGCACGTAAATCCTTAG
AAATACAACTCGAGGCTTATCAGCAGCTTGGTTTAACCGACGCGATAGAGCGAACTAAGCAGTTAATGCAGCTTAACCCT
TTATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KU21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.589

100

0.386
  comL Neisseria gonorrhoeae MS11

37.759

100

0.378