Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FORC55_RS10120 Genome accession   NZ_CP016987
Coordinates   2140179..2141843 (+) Length   554 a.a.
NCBI ID   WP_000879550.1    Uniprot ID   A0AAU8WIH4
Organism   Vibrio cholerae strain FORC_055 isolate MFDS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2135179..2146843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC55_RS10105 (FORC55_1908) dnaK 2136246..2138153 (-) 1908 WP_000516149.1 molecular chaperone DnaK -
  FORC55_RS19830 - 2138311..2138424 (+) 114 WP_001909931.1 hypothetical protein -
  FORC55_RS10110 (FORC55_1909) grpE 2138417..2139019 (-) 603 WP_001964159.1 nucleotide exchange factor GrpE -
  FORC55_RS10115 (FORC55_1910) nadK 2139165..2140049 (+) 885 WP_000742830.1 NAD(+) kinase -
  FORC55_RS10120 (FORC55_1911) recN 2140179..2141843 (+) 1665 WP_000879550.1 DNA repair protein RecN Machinery gene
  FORC55_RS10125 (FORC55_1912) bamE 2142002..2142361 (+) 360 WP_001160908.1 outer membrane protein assembly factor BamE -
  FORC55_RS10130 (FORC55_1913) - 2142437..2142742 (-) 306 WP_001924829.1 RnfH family protein -
  FORC55_RS10135 (FORC55_1914) - 2142745..2143179 (-) 435 WP_000815880.1 SRPBCC family protein -
  FORC55_RS10140 (FORC55_1915) smpB 2143363..2143848 (+) 486 WP_000162689.1 SsrA-binding protein SmpB -
  FORC55_RS10150 (FORC55_1916) - 2144449..2145687 (+) 1239 WP_069647826.1 integrase domain-containing protein -

Sequence

Protein


Download         Length: 554 a.a.        Molecular weight: 61245.97 Da        Isoelectric Point: 5.6762

>NTDB_id=165608 FORC55_RS10120 WP_000879550.1 2140179..2141843(+) (recN) [Vibrio cholerae strain FORC_055 isolate MFDS]
MLAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRAEASMVRQGEDKTEVSAAFHLDNNLLASRWL
EDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQLKTLGQLLINVHGQHAHQQLMKPEYQLSMLDQYAGHADLLKATR
HAYQNWRQASNQLKQLRENSQQNQAQLQLLEYQIKELNELALGEDEFVELEQEHKRLANSGDLALNCQRAIELLNEGEEV
NALGLLQSVSHTLIDLAEMDSKLTALPSMVAEALIQLEETYHELRNYLDSIDVDPERMAYVEERYSKVMSLARKHHVLPE
ELYQHHQALLQQIAQLDCSDEKMSALASEVDVLYQTFVAAADKLHKSRVRYAKELDKLISQSMHELSMEKAQFKIEVLQD
SAHSSPLGFDAVTFLVSTNPGQPLQPIAKVASGGELSRMSLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKLLRKL
GESTQVLCVTHLPQVAGCGHHQLFVAKQTKAGKTETQMLKLDQEQRIAELARLLGGSQITESTLANAKELLIAA

Nucleotide


Download         Length: 1665 bp        

>NTDB_id=165608 FORC55_RS10120 WP_000879550.1 2140179..2141843(+) (recN) [Vibrio cholerae strain FORC_055 isolate MFDS]
ATGCTGGCTCACTTAAGTATCAATAACTTCGCTATCGTAAAGTCACTACAACTCGAATTATCAAAAGGAATGACCACCAT
CACCGGTGAAACTGGTGCTGGTAAATCCATTGCGATTGATGCTTTAGGTTTATGTCTCGGTGGTCGAGCCGAAGCCAGCA
TGGTGCGTCAAGGTGAAGATAAAACCGAAGTCAGCGCCGCCTTTCATCTGGATAACAATCTGCTCGCCAGCCGTTGGTTA
GAAGATAATGAACTGCTTGAAGGCAAAGAGTGCATTCTGCGCCGAATCATCACCAAAGATGGGCGCTCTAAAGCCTTTAT
TAATGGCAGCCCAGTTCCGCTCTCTCAACTCAAAACATTGGGGCAACTGCTGATCAATGTGCATGGTCAACACGCACATC
AGCAACTGATGAAACCAGAATATCAACTCAGCATGCTTGATCAATACGCAGGTCATGCAGACTTGCTCAAAGCCACGCGT
CACGCCTATCAAAATTGGCGTCAAGCGAGCAATCAGCTCAAACAGCTGCGCGAAAATAGCCAACAAAATCAGGCACAATT
ACAACTTTTGGAATACCAAATCAAAGAGCTCAACGAATTGGCTCTCGGTGAGGATGAGTTTGTCGAACTAGAGCAAGAGC
ACAAACGCTTAGCCAATAGCGGCGATCTGGCACTCAACTGCCAACGCGCGATTGAACTGCTCAATGAAGGGGAAGAAGTA
AACGCCTTAGGCCTTTTACAAAGTGTTAGCCATACGCTGATTGATCTGGCTGAAATGGATAGCAAACTGACAGCGCTCCC
TTCTATGGTGGCCGAAGCTCTGATCCAGCTTGAAGAAACCTATCACGAGCTGCGCAACTACTTGGATTCGATTGATGTCG
ACCCAGAACGCATGGCGTATGTAGAAGAGCGCTACTCCAAAGTAATGTCGCTCGCGCGTAAACATCATGTACTGCCAGAA
GAGCTGTATCAGCATCACCAAGCACTCTTGCAGCAAATTGCTCAGCTAGATTGTTCTGACGAGAAAATGTCAGCACTCGC
GAGTGAAGTCGACGTGCTCTACCAAACCTTTGTTGCGGCCGCTGACAAACTGCACAAATCTCGTGTTCGCTATGCCAAAG
AATTGGATAAATTGATTAGCCAAAGCATGCATGAGCTGAGCATGGAAAAAGCGCAATTCAAAATCGAAGTGCTGCAAGAC
AGCGCGCACTCATCGCCATTAGGTTTTGATGCCGTGACTTTCTTAGTCTCGACGAACCCGGGTCAACCGCTGCAACCCAT
CGCCAAAGTGGCCTCTGGTGGTGAACTGTCACGGATGTCATTGGCGATCCAAGTGATTACTGCGCAGAAAGTCGATACTC
CAAGCCTGATTTTTGATGAAGTTGACGTGGGTATTTCAGGGCCAACAGCAGCCGTAGTTGGCAAACTACTGCGCAAATTG
GGCGAGTCGACTCAAGTACTGTGTGTCACCCACTTACCGCAAGTGGCAGGTTGCGGACACCATCAACTGTTTGTCGCCAA
ACAGACCAAAGCAGGCAAAACCGAAACGCAAATGCTCAAACTGGATCAAGAACAGCGCATTGCTGAACTTGCACGCTTGC
TCGGAGGCAGCCAAATTACCGAATCCACGCTCGCGAATGCTAAAGAGCTATTAATCGCAGCCTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAU8WIH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

37.3

100

0.379
  recN Bacillus subtilis subsp. subtilis str. 168

35.192

100

0.365

Multiple sequence alignment