Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BFV99_RS01460 Genome accession   NZ_CP016955
Coordinates   304181..304855 (+) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain RIVM-EMC2982     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 299181..309855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFV99_RS01445 (BFV99_01405) - 299727..302333 (-) 2607 WP_025297625.1 phosphomannomutase/phosphoglucomutase -
  BFV99_RS01450 (BFV99_01410) dut 302370..302825 (-) 456 WP_003098293.1 dUTP diphosphatase -
  BFV99_RS01455 (BFV99_01415) coaBC 302833..304041 (-) 1209 WP_003098292.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BFV99_RS01460 (BFV99_01420) radC 304181..304855 (+) 675 WP_003096559.1 DNA repair protein RadC Machinery gene
  BFV99_RS01465 (BFV99_01425) - 304872..305420 (-) 549 WP_003098290.1 hypothetical protein -
  BFV99_RS01470 (BFV99_01430) - 305446..307026 (-) 1581 WP_003098288.1 ABC transporter substrate-binding protein -
  BFV99_RS01475 (BFV99_01435) rpmB 307381..307617 (+) 237 WP_003096556.1 50S ribosomal protein L28 -
  BFV99_RS01480 (BFV99_01440) rpmG 307629..307784 (+) 156 WP_003096555.1 50S ribosomal protein L33 -
  BFV99_RS01485 (BFV99_01445) - 307919..308281 (-) 363 WP_003096551.1 cupin domain-containing protein -
  BFV99_RS01490 (BFV99_01450) - 308347..309681 (-) 1335 WP_003146622.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=165455 BFV99_RS01460 WP_003096559.1 304181..304855(+) (radC) [Pseudomonas aeruginosa strain RIVM-EMC2982]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=165455 BFV99_RS01460 WP_003096559.1 304181..304855(+) (radC) [Pseudomonas aeruginosa strain RIVM-EMC2982]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGTAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCCTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACTGCGCGCCTCAAGGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397

Multiple sequence alignment