Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BC350_RS15775 Genome accession   NZ_CP016914
Coordinates   3284622..3285455 (-) Length   277 a.a.
NCBI ID   WP_016721789.1    Uniprot ID   A0ABX7ZTT2
Organism   Ralstonia pseudosolanacearum strain CQPS-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3279622..3290455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC350_RS15760 (BC350_15345) - 3281301..3282080 (+) 780 WP_080705178.1 hypothetical protein -
  BC350_RS15765 (BC350_15350) - 3282120..3282323 (+) 204 WP_011001567.1 DUF465 domain-containing protein -
  BC350_RS15770 (BC350_15355) - 3282403..3284544 (+) 2142 WP_011001568.1 ATP-dependent DNA helicase -
  BC350_RS15775 (BC350_15360) comL 3284622..3285455 (-) 834 WP_016721789.1 outer membrane protein assembly factor BamD Machinery gene
  BC350_RS15780 (BC350_15365) - 3285471..3286582 (+) 1112 Protein_3127 RluA family pseudouridine synthase -
  BC350_RS15785 (BC350_15370) pgeF 3286566..3287369 (+) 804 WP_011001571.1 peptidoglycan editing factor PgeF -
  BC350_RS15790 (BC350_15375) - 3287409..3287639 (-) 231 WP_016721791.1 hypothetical protein -
  BC350_RS28315 - 3287655..3287729 (-) 75 Protein_3130 twin-arginine translocation signal domain-containing protein -
  BC350_RS15795 (BC350_15380) phaC 3287923..3289719 (+) 1797 WP_011001573.1 class I poly(R)-hydroxyalkanoic acid synthase -

Sequence

Protein


Download         Length: 277 a.a.        Molecular weight: 31455.54 Da        Isoelectric Point: 8.6499

>NTDB_id=165436 BC350_RS15775 WP_016721789.1 3284622..3285455(-) (comL) [Ralstonia pseudosolanacearum strain CQPS-1]
MSVTSMKLARIRARIGAVLAAGVACLAISACGIMPEQQDETAGWSANKLYSEAKDALDGGDYSKAVKYYEKLESRYPFGP
FAQQAQIETAYANYKDGETAAALAAVDRFIQLHPNHPSVDYAYYLKGLINFNDNLGWLGRFSNQDLSERDPKAARAAYDA
FKTLITRFPNSKYAPDAAQRMQYIVNAMAEHEVQAARYYYRRGAYLAATNRAQEAIKDYDRAPAVEEGLYIMMKSYEALG
MKDLRDDTERIIKQNYPNSDFLLYGQRKKAKPWYQWW

Nucleotide


Download         Length: 834 bp        

>NTDB_id=165436 BC350_RS15775 WP_016721789.1 3284622..3285455(-) (comL) [Ralstonia pseudosolanacearum strain CQPS-1]
ATGTCGGTCACGAGCATGAAGCTGGCGCGCATTCGCGCGCGAATCGGAGCGGTATTGGCGGCGGGCGTTGCATGCCTCGC
GATCTCGGCCTGCGGCATCATGCCGGAACAACAGGACGAGACCGCAGGCTGGTCGGCCAACAAATTATATTCGGAAGCGA
AGGACGCGCTCGACGGCGGCGACTACAGCAAGGCCGTCAAGTACTACGAAAAGCTCGAGAGCCGCTATCCGTTCGGGCCC
TTTGCCCAGCAGGCGCAGATCGAAACCGCCTACGCCAATTACAAGGACGGCGAAACCGCCGCCGCGCTGGCTGCGGTCGA
TCGCTTCATCCAGCTGCACCCGAATCACCCCAGCGTCGATTACGCCTACTACCTCAAGGGCCTGATCAACTTCAACGACA
ACCTGGGCTGGCTGGGCCGCTTCTCCAACCAGGACCTGAGCGAGCGCGATCCGAAGGCGGCCCGCGCCGCCTACGATGCG
TTCAAGACGCTGATCACGCGTTTCCCGAACAGCAAGTACGCGCCGGACGCCGCGCAGCGCATGCAGTACATCGTCAACGC
GATGGCCGAGCATGAAGTGCAGGCCGCCCGCTACTACTACCGCCGCGGCGCCTACCTGGCCGCCACCAACCGCGCGCAGG
AAGCCATCAAGGATTACGATCGCGCGCCGGCCGTGGAAGAAGGGCTGTACATCATGATGAAGTCCTACGAAGCGCTTGGC
ATGAAAGACCTGCGCGACGACACCGAGCGCATCATCAAGCAGAATTATCCGAACAGCGATTTCCTGCTGTACGGACAGCG
CAAGAAGGCCAAGCCGTGGTACCAGTGGTGGTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(46-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

47.348

95.307

0.451
  comL Neisseria gonorrhoeae MS11

45.833

95.307

0.437

Multiple sequence alignment