Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   BC350_RS10885 Genome accession   NZ_CP016914
Coordinates   2263099..2265291 (+) Length   730 a.a.
NCBI ID   WP_089190635.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain CQPS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2258099..2270291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC350_RS10865 (BC350_10570) secD 2258346..2260226 (-) 1881 WP_089190633.1 protein translocase subunit SecD -
  BC350_RS10870 (BC350_10575) yajC 2260348..2260677 (-) 330 WP_011002621.1 preprotein translocase subunit YajC -
  BC350_RS10875 (BC350_10580) tgt 2260789..2261940 (-) 1152 WP_016723717.1 tRNA guanosine(34) transglycosylase Tgt -
  BC350_RS10880 (BC350_10585) queA 2261934..2263022 (-) 1089 WP_089190634.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  BC350_RS10885 (BC350_10590) recG 2263099..2265291 (+) 2193 WP_089190635.1 ATP-dependent DNA helicase RecG Machinery gene
  BC350_RS10890 (BC350_10595) - 2265310..2265513 (-) 204 WP_016723714.1 GDCCVxC domain-containing (seleno)protein -
  BC350_RS10895 (BC350_10600) - 2265525..2265965 (-) 441 WP_011002617.1 hypothetical protein -
  BC350_RS10905 (BC350_10605) - 2266507..2267637 (-) 1131 WP_089190637.1 DSD1 family PLP-dependent enzyme -
  BC350_RS10910 (BC350_10610) - 2267780..2268721 (+) 942 WP_089190849.1 LysR family transcriptional regulator -
  BC350_RS10915 (BC350_10615) - 2268912..2270135 (-) 1224 WP_058908278.1 diaminopropionate ammonia-lyase -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 79185.28 Da        Isoelectric Point: 9.5031

>NTDB_id=165425 BC350_RS10885 WP_089190635.1 2263099..2265291(+) (recG) [Ralstonia pseudosolanacearum strain CQPS-1]
MPARARSATAAVPAPDADAAPAAGPRRAPAAKPADKPAAKTARPADKLAKLGLRRDVDLVLHLPMRYEDETALLTIAEAV
ARANTGWAAQVDGVVTRNEVAFRPRRQLVVHIADDSGELVLRFLNFYGSQVKQMAEGARLRVRGEVRGGFFGAEMVHPAV
RAVTPDEPLPDRLTPVYPSTAGVAQAYLRKAILNALGRTPLPETLPDSLLRGPLAPLKLMAPAEAVRLLHQPTPDVDEHS
LVERTHPAWLRIKFDELLAQQLSLKRAQAARRTRSAPVLRAGGADGLLARFLAALPFKLTGAQARVWEEIRADLARPYPM
QRLLQGDVGSGKTVIAALAACQAIDAGRQAALMAPTELLAEQHYRKLSAWLAPLGVDIVWLAGSLKRKQKDEAAARVAAG
TAQLVIGTHALIQDTVTFARLGLAVVDEQHRFGVAQRLALRGKAGGTDTPIAETAQLVPHQLMMSATPIPRTLAMTYYAD
LDVSAIDELPPGRTPVVTRLVNDARRDEVIERIHAAAREGRQVYWVCPLIEESEALQLQTAVETFETLSQSLAGLKVGLV
HGRLPSADKAAVMSAFAGGELHVLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESVCILLYQAPLS
PTAKQRLQTMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLRFADLNHDAWMVEFAQGAAEQMLARFPDAVEAHLKRW
LGEREHYLRV

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=165425 BC350_RS10885 WP_089190635.1 2263099..2265291(+) (recG) [Ralstonia pseudosolanacearum strain CQPS-1]
GTGCCCGCTCGCGCCCGCTCCGCCACCGCCGCCGTTCCCGCGCCCGATGCCGACGCGGCGCCGGCCGCCGGCCCCAGGCG
CGCGCCCGCGGCGAAGCCCGCGGACAAGCCGGCCGCCAAGACCGCCCGCCCCGCCGACAAGCTGGCCAAGCTCGGCCTGC
GCCGCGACGTCGATCTCGTGCTGCACCTGCCGATGCGCTACGAGGACGAAACCGCGCTGCTGACCATCGCCGAGGCCGTC
GCCCGCGCCAATACCGGCTGGGCCGCGCAGGTGGATGGGGTGGTGACGCGCAACGAAGTGGCGTTCCGGCCCCGCCGGCA
ACTGGTGGTGCACATCGCTGACGATTCCGGCGAGCTGGTGCTGCGCTTTCTCAACTTCTACGGCAGCCAGGTCAAGCAGA
TGGCCGAGGGTGCGCGCCTGCGCGTGCGCGGCGAGGTGCGCGGCGGCTTCTTCGGCGCGGAGATGGTGCATCCGGCGGTG
CGCGCCGTGACGCCGGACGAGCCGCTGCCCGACCGCCTGACCCCGGTCTATCCCAGCACCGCCGGCGTGGCGCAGGCGTA
TCTGCGCAAGGCCATCCTGAACGCGCTCGGCCGCACGCCGCTGCCCGAGACCCTGCCGGACAGCCTGTTGCGCGGGCCGC
TGGCGCCGCTCAAGCTGATGGCGCCCGCCGAGGCCGTCCGCCTGCTGCACCAGCCCACGCCCGACGTGGACGAGCACAGC
CTGGTCGAACGCACCCACCCGGCCTGGCTGCGCATCAAGTTCGACGAACTGCTGGCGCAGCAACTGTCGCTCAAGCGCGC
CCAGGCCGCGCGCCGCACGCGCAGCGCGCCGGTGCTGCGGGCCGGCGGCGCGGACGGGCTGCTCGCGCGCTTCCTGGCGG
CGCTGCCCTTCAAGCTGACCGGCGCGCAGGCCCGCGTGTGGGAGGAGATCCGCGCGGACCTCGCCCGGCCGTACCCGATG
CAGCGGCTGCTGCAGGGCGACGTGGGCAGCGGCAAGACCGTCATCGCCGCGCTGGCCGCGTGCCAGGCCATCGACGCCGG
CCGGCAGGCCGCGCTGATGGCGCCGACCGAACTGCTGGCCGAGCAGCACTACCGCAAGCTGTCGGCCTGGCTCGCGCCGC
TGGGCGTGGACATCGTCTGGCTGGCCGGCAGCCTCAAGCGCAAGCAGAAGGACGAGGCCGCTGCGCGCGTGGCCGCCGGC
ACCGCGCAACTGGTGATCGGCACCCATGCGCTGATCCAGGACACCGTGACCTTCGCCCGCCTGGGGCTGGCCGTGGTGGA
CGAGCAGCACCGCTTCGGCGTGGCGCAGCGGCTGGCGCTGCGCGGCAAGGCCGGCGGCACCGACACGCCCATCGCCGAGA
CCGCGCAGCTGGTGCCGCACCAGCTGATGATGTCGGCCACGCCGATCCCGCGCACGCTGGCGATGACGTACTACGCCGAC
CTCGACGTCTCGGCCATCGACGAGCTGCCGCCCGGCCGCACGCCGGTGGTCACGCGCCTGGTCAACGATGCGCGCCGCGA
CGAGGTGATCGAACGCATCCACGCCGCCGCGCGCGAGGGGCGGCAGGTCTACTGGGTCTGTCCCCTGATCGAAGAAAGCG
AGGCGCTGCAGCTGCAGACCGCCGTCGAGACGTTCGAGACGCTGTCGCAGAGCCTGGCCGGCCTCAAGGTCGGGCTGGTG
CACGGGCGCCTGCCGTCCGCCGACAAGGCCGCGGTGATGAGCGCCTTCGCCGGCGGCGAGCTGCACGTGCTGGTGGCGAC
CACCGTGATCGAAGTGGGCGTCGACGTGCCCAACGCCTCGCTGATGGTGATCGAGCACGCCGAGCGCTTCGGGCTGGCGC
AGCTCCATCAGCTGCGCGGACGGGTCGGTCGCGGCACGGCCGAATCGGTCTGCATCCTGCTGTACCAGGCGCCCCTGTCG
CCGACGGCCAAACAGCGCCTGCAGACCATGCGCGAGACCACCGACGGCTTCGAGATCGCGCGGCGCGACCTGGATATCCG
CGGTCCCGGCGAATTCCTCGGTGCGCGGCAATCGGGCGAGGCCATGCTGCGCTTTGCCGACCTGAACCACGATGCGTGGA
TGGTCGAGTTCGCCCAGGGCGCGGCCGAGCAGATGCTGGCGCGCTTTCCCGACGCGGTGGAGGCGCACCTCAAGCGCTGG
CTCGGCGAGCGCGAGCACTACCTGCGCGTCTAG

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(47-194)

Helicase conserved C-terminal domain (Helicase_C)

(515-625)

DEAD/DEAH box helicase (DEAD)

(320-472)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(653-713)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

58.285

94.247

0.549
  recG/mmsA Streptococcus pneumoniae R6

41.203

91.096

0.375
  recG/mmsA Streptococcus pneumoniae R36A

41.203

91.096

0.375

Multiple sequence alignment