Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BARD7_RS14470 Genome accession   NZ_CP016913
Coordinates   2931021..2931653 (-) Length   210 a.a.
NCBI ID   WP_003151798.1    Uniprot ID   A0A9P1NJB3
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2926021..2936653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS14450 (BARD7_02958) - 2927051..2927236 (-) 186 WP_003151806.1 YvzF family protein -
  BARD7_RS14455 (BARD7_02959) - 2927353..2928795 (+) 1443 WP_065982288.1 spore germination protein -
  BARD7_RS14460 (BARD7_02960) - 2928770..2929870 (+) 1101 WP_065982289.1 spore germination protein -
  BARD7_RS14465 (BARD7_02961) - 2929867..2930979 (+) 1113 WP_065982290.1 Ger(x)C family spore germination protein -
  BARD7_RS14470 (BARD7_02962) vraR 2931021..2931653 (-) 633 WP_003151798.1 response regulator transcription factor Regulator
  BARD7_RS14475 (BARD7_02963) liaS 2931631..2932713 (-) 1083 WP_003151796.1 two-component system sensor histidine kinase LiaS -
  BARD7_RS14480 (BARD7_02964) liaF 2932710..2933441 (-) 732 WP_065982291.1 cell wall-active antibiotics response protein LiaF -
  BARD7_RS14485 (BARD7_02965) - 2933470..2934339 (-) 870 WP_065982292.1 DUF4097 domain-containing protein -
  BARD7_RS14490 (BARD7_02966) liaH 2934445..2935122 (-) 678 WP_065982293.1 stress responsive protein LiaH -
  BARD7_RS14495 (BARD7_02967) - 2935136..2935516 (-) 381 WP_065522204.1 protein liaI -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22991.65 Da        Isoelectric Point: 4.8837

>NTDB_id=165358 BARD7_RS14470 WP_003151798.1 2931021..2931653(-) (vraR) [Bacillus amyloliquefaciens strain RD7-7]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVAGEASDGQQGVDLAAELLPDVILMDLVMDGMDGIEATKQICAKLNDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIAEAIRAAAKGEPKLESKVAGKVLSRLRHSENQLPHETLTKRELEILCLV
AEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVT

Nucleotide


Download         Length: 633 bp        

>NTDB_id=165358 BARD7_RS14470 WP_003151798.1 2931021..2931653(-) (vraR) [Bacillus amyloliquefaciens strain RD7-7]
GTGATTCGAGTGTTACTGATTGATGATCACGAAATGGTCAGGATGGGCCTGGCCGCATTTTTAGAAGCACAGCCGGACAT
TGAAGTCGCCGGTGAAGCGTCAGACGGACAGCAGGGCGTCGATCTGGCCGCAGAGCTTTTGCCGGATGTGATTTTAATGG
ATCTTGTCATGGACGGCATGGACGGCATCGAAGCGACAAAACAGATCTGCGCGAAACTCAATGATCCGAAAATCATCGTG
CTGACGAGCTTTATTGATGACGACAAAGTGTATCCGGTGATCGAAGCGGGGGCGCTCAGCTATTTGCTGAAAACATCCAA
AGCGGCAGAAATAGCCGAAGCCATCAGAGCGGCTGCCAAGGGCGAACCGAAGCTTGAATCGAAGGTGGCGGGAAAAGTGC
TGTCAAGGCTGCGCCATTCAGAGAATCAGCTTCCGCATGAAACACTGACAAAAAGAGAACTGGAAATCCTCTGTCTCGTC
GCGGAAGGCAAGACGAATAAAGAGATTGGAGAAGAGCTGTTCATAACGATTAAAACGGTGAAAACTCACATCACAAATAT
ATTGTCAAAGCTTGATGTCAGTGACCGCACGCAGGCAGCCGTATATGCCCACCGCAATCATCTCGTGACATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NJB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.481

99.048

0.5
  degU Bacillus subtilis subsp. subtilis str. 168

36.771

100

0.39