Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   BARD7_RS08055 Genome accession   NZ_CP016913
Coordinates   1628402..1628833 (+) Length   143 a.a.
NCBI ID   WP_065981489.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1623402..1633833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS08035 (BARD7_01645) spoVS 1623973..1624233 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  BARD7_RS08040 (BARD7_01646) tdh 1624490..1625536 (+) 1047 WP_065981486.1 L-threonine 3-dehydrogenase -
  BARD7_RS08045 (BARD7_01647) - 1625549..1626727 (+) 1179 WP_155759168.1 glycine C-acetyltransferase -
  BARD7_RS08050 (BARD7_01648) miaB 1626870..1628399 (+) 1530 WP_065981488.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  BARD7_RS08055 (BARD7_01649) ymcA 1628402..1628833 (+) 432 WP_065981489.1 RicAFT regulatory complex protein RicA family protein Regulator
  BARD7_RS08060 (BARD7_01650) cotE 1629087..1629632 (+) 546 WP_065981490.1 outer spore coat protein CotE -
  BARD7_RS08065 (BARD7_01651) hexA 1629748..1632333 (+) 2586 WP_065982878.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16102.21 Da        Isoelectric Point: 5.0213

>NTDB_id=165306 BARD7_RS08055 WP_065981489.1 1628402..1628833(+) (ymcA) [Bacillus amyloliquefaciens strain RD7-7]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSVIINQIKALQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQTEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSF

Nucleotide


Download         Length: 432 bp        

>NTDB_id=165306 BARD7_RS08055 WP_065981489.1 1628402..1628833(+) (ymcA) [Bacillus amyloliquefaciens strain RD7-7]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCCAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAATGAAAATGAAAAAGTCTCTGTGATTATTAATCAGATTAAAGCCCTGCAAA
AGCAAGCCGTTAACCTGAAGCATTACGAAAAGCTTGAAGCTTTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATCCCGATCATTCAGGAATTCAGAGATTCCCAGACTGAGGTTAATGACCTTCTTCAGCTTGTCGCTCA
TACGATTTCCAATCAGGTGACAAACGAAATCATTACGTCTACCGGCGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTTTTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

92.308

100

0.923