Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   BARD7_RS07080 Genome accession   NZ_CP016913
Coordinates   1424047..1425069 (+) Length   340 a.a.
NCBI ID   WP_065981391.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1419047..1430069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS07045 (BARD7_01444) - 1419406..1419645 (+) 240 WP_003154475.1 YlbE-like family protein -
  BARD7_RS07050 (BARD7_01445) ylbF 1419717..1420166 (+) 450 WP_065981388.1 YlbF family regulator Regulator
  BARD7_RS07055 (BARD7_01446) - 1420225..1420497 (+) 273 WP_013352153.1 YlbG family protein -
  BARD7_RS07060 (BARD7_01447) rsmD 1420796..1421350 (+) 555 WP_065981389.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BARD7_RS07065 (BARD7_01448) coaD 1421355..1421837 (+) 483 WP_013352154.1 pantetheine-phosphate adenylyltransferase -
  BARD7_RS07070 (BARD7_01449) ylbJ 1421855..1423084 (-) 1230 WP_065981390.1 sporulation integral membrane protein YlbJ -
  BARD7_RS07075 (BARD7_01450) - 1423262..1424041 (+) 780 WP_013352156.1 patatin-like phospholipase family protein -
  BARD7_RS07080 (BARD7_01451) sepM 1424047..1425069 (+) 1023 WP_065981391.1 SepM family pheromone-processing serine protease Regulator
  BARD7_RS07085 (BARD7_01452) - 1425088..1426335 (-) 1248 WP_065981392.1 nucleotidyltransferase -
  BARD7_RS07090 (BARD7_01453) - 1426543..1427061 (+) 519 WP_065981393.1 YceD family protein -
  BARD7_RS18505 (BARD7_01454) rpmF 1427083..1427262 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  BARD7_RS07095 (BARD7_01455) gerR 1427419..1427994 (+) 576 WP_013352160.1 sporulation-specific transcriptional regulator GerR -
  BARD7_RS07100 (BARD7_01456) - 1428035..1428517 (-) 483 WP_013352161.1 N-acetyltransferase -
  BARD7_RS07105 (BARD7_01457) - 1428680..1429561 (+) 882 WP_065981394.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37479.24 Da        Isoelectric Point: 9.6234

>NTDB_id=165294 BARD7_RS07080 WP_065981391.1 1424047..1425069(+) (sepM) [Bacillus amyloliquefaciens strain RD7-7]
MKAKHFRWVFIILILLIAITFIKLPYYITQPGEASELRPLIKVDGGYPEKGSLSLMTVKVGPANPYTYLWAKVHPYDEIV
PDESIKEEGETDSDYMKRQLQMMKSSQENAVIAAYQKAGKQVKYSFNGIYASSVVSNMPAKGKLKVGDKIISADGKKYES
AEKLIDYISSKKAGEKVTFNIERDTKEKTVTLKLKSFPDDPKRAGIGVALYTDRNVKVKPDLHFSIENIGGPSAGLMMSL
EIYNQLTKPDETKGYNIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGAENSDYKNAVKTAKAIKSDMKIV
PVDTMQDALDYLNKLKVKST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=165294 BARD7_RS07080 WP_065981391.1 1424047..1425069(+) (sepM) [Bacillus amyloliquefaciens strain RD7-7]
ATGAAAGCAAAACATTTTCGCTGGGTGTTTATCATCCTGATCTTATTAATCGCTATTACATTTATTAAGCTTCCGTATTA
CATCACACAGCCGGGAGAAGCATCAGAGCTGAGACCGCTGATTAAGGTGGACGGAGGCTATCCTGAAAAAGGAAGCCTTT
CCTTGATGACTGTCAAAGTAGGCCCCGCCAATCCTTATACATATCTTTGGGCGAAGGTGCATCCTTACGATGAAATCGTC
CCTGATGAAAGCATAAAAGAAGAGGGCGAAACTGATTCAGACTATATGAAGCGCCAGCTGCAGATGATGAAAAGCTCTCA
AGAAAACGCGGTCATTGCCGCTTATCAAAAAGCCGGCAAACAGGTAAAATACTCATTTAACGGCATTTACGCCAGCTCAG
TCGTCTCCAATATGCCGGCAAAAGGAAAATTAAAGGTCGGTGATAAAATCATCAGCGCGGACGGGAAAAAATATGAATCC
GCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGGGAAAAAGTAACGTTTAACATTGAACGTGACACGAAAGA
AAAGACCGTTACTCTTAAGCTGAAATCATTCCCGGACGATCCGAAAAGAGCCGGAATCGGCGTAGCGTTATATACGGACC
GGAACGTGAAAGTGAAGCCGGATCTTCATTTCAGTATTGAAAACATCGGCGGGCCTTCTGCCGGTCTCATGATGTCTTTG
GAAATTTACAATCAGCTGACAAAACCTGACGAAACAAAAGGCTACAATATAGCCGGAACGGGAACAATCGACGTTGACGG
CAAGGTCGGACCGATCGGCGGAATCGATCAGAAAGTCGTCGCCGCAGACAAAGCGGGAAAAGATATTTTCTTTGCGCCGA
ACCAAAACGGAGCTGAAAACTCTGATTATAAAAATGCAGTAAAAACGGCGAAAGCAATAAAGTCTGATATGAAAATCGTT
CCTGTCGATACGATGCAGGACGCACTTGATTATTTGAATAAGCTGAAAGTAAAAAGCACCTGA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(109-218)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(230-330)

PDZ domain (PDZ_2)

(127-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.017

100

0.397