Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   BARD7_RS07050 Genome accession   NZ_CP016913
Coordinates   1419717..1420166 (+) Length   149 a.a.
NCBI ID   WP_065981388.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1414717..1425166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS07010 (BARD7_01437) ctaE 1414838..1415461 (+) 624 WP_013352146.1 cytochrome c oxidase subunit III -
  BARD7_RS07015 (BARD7_01438) ctaF 1415464..1415796 (+) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  BARD7_RS07020 (BARD7_01439) ctaG 1415821..1416705 (+) 885 WP_014471807.1 cytochrome c oxidase assembly factor CtaG -
  BARD7_RS07025 (BARD7_01440) - 1416739..1417098 (-) 360 WP_013352148.1 YugN family protein -
  BARD7_RS07030 (BARD7_01441) - 1417239..1417682 (+) 444 WP_065981385.1 CBS domain-containing protein -
  BARD7_RS07035 (BARD7_01442) - 1417767..1418807 (+) 1041 WP_065981386.1 CAP domain-containing protein -
  BARD7_RS07040 (BARD7_01443) - 1418980..1419390 (+) 411 WP_065981387.1 YlbD family protein -
  BARD7_RS07045 (BARD7_01444) - 1419406..1419645 (+) 240 WP_003154475.1 YlbE-like family protein -
  BARD7_RS07050 (BARD7_01445) ylbF 1419717..1420166 (+) 450 WP_065981388.1 YlbF family regulator Regulator
  BARD7_RS07055 (BARD7_01446) - 1420225..1420497 (+) 273 WP_013352153.1 YlbG family protein -
  BARD7_RS07060 (BARD7_01447) rsmD 1420796..1421350 (+) 555 WP_065981389.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BARD7_RS07065 (BARD7_01448) coaD 1421355..1421837 (+) 483 WP_013352154.1 pantetheine-phosphate adenylyltransferase -
  BARD7_RS07070 (BARD7_01449) ylbJ 1421855..1423084 (-) 1230 WP_065981390.1 sporulation integral membrane protein YlbJ -
  BARD7_RS07075 (BARD7_01450) - 1423262..1424041 (+) 780 WP_013352156.1 patatin-like phospholipase family protein -
  BARD7_RS07080 (BARD7_01451) sepM 1424047..1425069 (+) 1023 WP_065981391.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16890.98 Da        Isoelectric Point: 4.8089

>NTDB_id=165293 BARD7_RS07050 WP_065981388.1 1419717..1420166(+) (ylbF) [Bacillus amyloliquefaciens strain RD7-7]
MYATIESVRLQSEAEQLAGMILQSETAENYRDCYKRLQEDEEARRIIRSFMSIKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=165293 BARD7_RS07050 WP_065981388.1 1419717..1420166(+) (ylbF) [Bacillus amyloliquefaciens strain RD7-7]
ATGTATGCAACAATTGAGTCCGTCAGGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCACGGCGGATTATTCGTTCTTTTATGAGCATTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATATCATCCTGACTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAGCTGGATTTAAATGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCACTGCTTGACGAGAT
CAGCATCGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTTCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

89.262

100

0.893