Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   BARD7_RS05470 Genome accession   NZ_CP016913
Coordinates   1119292..1120452 (+) Length   386 a.a.
NCBI ID   WP_065981173.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1114292..1125452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS05445 (BARD7_01106) - 1115039..1116226 (+) 1188 WP_065981170.1 putative glycoside hydrolase -
  BARD7_RS05450 (BARD7_01107) - 1116344..1116922 (+) 579 WP_013351830.1 GNAT family N-acetyltransferase -
  BARD7_RS05455 (BARD7_01108) spx 1117100..1117495 (+) 396 WP_003327578.1 transcriptional regulator Spx -
  BARD7_RS05460 (BARD7_01109) - 1117553..1118209 (-) 657 WP_065981171.1 TerC family protein -
  BARD7_RS05465 (BARD7_01110) mecA 1118485..1119141 (+) 657 WP_065981172.1 adaptor protein MecA Regulator
  BARD7_RS05470 (BARD7_01111) coiA 1119292..1120452 (+) 1161 WP_065981173.1 competence protein CoiA family protein Machinery gene
  BARD7_RS05475 (BARD7_01112) pepF 1120681..1122510 (+) 1830 WP_013351834.1 oligoendopeptidase F Regulator
  BARD7_RS19090 (BARD7_01113) - 1122546..1122713 (-) 168 WP_016938224.1 hypothetical protein -
  BARD7_RS05480 (BARD7_01114) spxH 1122998..1123900 (-) 903 WP_013351835.1 protease adaptor protein SpxH -
  BARD7_RS05485 (BARD7_01115) - 1123897..1124295 (-) 399 WP_065981174.1 thiol management oxidoreductase -
  BARD7_RS05490 (BARD7_01116) - 1124520..1125206 (-) 687 WP_065981175.1 lytic transglycosylase domain-containing protein -

Sequence


Protein


Download         Length: 386 a.a.        Molecular weight: 44718.56 Da        Isoelectric Point: 9.7151

>NTDB_id=165283 BARD7_RS05470 WP_065981173.1 1119292..1120452(+) (coiA) [Bacillus amyloliquefaciens strain RD7-7]
MFSALTAEGQLIQLAGSYSKEKAADLRKKRWFCPVCESELDIKLGREKLPHFAHKKSRLCPGESEPESEYHLEGKRQLFL
WLKTQRCAVSLEPYLPSAGQRPDLTAESGTERLAFEFQCANLSADSLKSRTAGLKNAGYRPVWIIGAKRLKRLAAHFFRL
SAYHWQFFEVNSFSSLMFYCPDVRSFYKLHSITPFYTGYSYAGLTMIPLHKANLKDISLPEGRHSVSLSSWGRAVAGFRK
KSGRFLSEDAGLIRRLFYERHQVAFPFLPSEVFIPVSAGFVFASPVFVWQGHLYLRLAELCEKGAPIRLSGMVHYLRQKI
RRQEIRMRYDSHEDLIGMAIKQYADFLCLQDFLRETENEVYMPSTQHKRPQTAEELRWRDLLFFRE

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=165283 BARD7_RS05470 WP_065981173.1 1119292..1120452(+) (coiA) [Bacillus amyloliquefaciens strain RD7-7]
ATGTTCAGTGCTTTGACTGCCGAGGGACAGCTCATTCAGCTGGCCGGAAGCTATTCAAAAGAAAAAGCGGCGGATTTGAG
AAAGAAACGCTGGTTCTGCCCCGTTTGTGAAAGTGAGCTTGATATTAAATTGGGACGGGAAAAACTGCCGCACTTCGCTC
ATAAAAAAAGCAGGCTGTGCCCGGGAGAATCCGAACCCGAAAGCGAATATCATCTGGAAGGAAAAAGACAGCTTTTTCTC
TGGCTTAAGACACAAAGGTGCGCCGTCAGCCTGGAGCCGTATCTGCCTTCCGCAGGACAGCGGCCTGATCTGACGGCGGA
AAGCGGCACAGAGCGGCTGGCTTTTGAATTTCAATGTGCAAACCTTTCGGCAGACTCTTTAAAGAGCCGGACGGCCGGCT
TGAAAAACGCCGGGTATCGGCCTGTCTGGATCATCGGAGCAAAACGCTTAAAACGGCTGGCTGCGCATTTTTTCCGGCTT
TCTGCTTATCACTGGCAATTCTTTGAAGTTAACTCATTTTCCTCTTTGATGTTTTACTGCCCCGACGTCCGCTCCTTTTA
CAAGCTGCATTCCATCACCCCGTTTTACACCGGCTATTCTTATGCCGGCTTAACCATGATCCCTCTTCATAAAGCAAACC
TAAAAGACATTTCTCTCCCGGAGGGCCGGCACAGCGTCAGCCTTTCCTCTTGGGGACGCGCCGTAGCAGGCTTCCGCAAA
AAAAGCGGCCGGTTTTTATCAGAAGATGCAGGTCTTATCCGGCGCCTTTTTTACGAAAGGCATCAGGTTGCCTTTCCTTT
TCTGCCTTCTGAAGTGTTTATTCCCGTTTCGGCGGGCTTTGTTTTCGCAAGTCCCGTTTTTGTGTGGCAGGGCCATTTAT
ACTTGCGGCTTGCGGAGCTTTGTGAAAAAGGCGCACCGATCCGGTTATCCGGCATGGTTCATTATTTGCGGCAAAAAATC
CGGCGTCAGGAGATCAGGATGCGGTATGATTCACATGAAGATCTCATCGGAATGGCGATAAAACAATATGCTGATTTCTT
ATGTTTGCAGGATTTTTTAAGGGAAACTGAGAATGAAGTATATATGCCTTCAACCCAACACAAGCGCCCTCAAACGGCCG
AAGAGCTGCGCTGGCGGGACCTGCTCTTTTTTAGGGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

45.479

97.409

0.443