Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BARD7_RS04495 Genome accession   NZ_CP016913
Coordinates   922470..923114 (+) Length   214 a.a.
NCBI ID   WP_065981040.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 917470..928114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS04480 (BARD7_00911) glpD 917644..919311 (+) 1668 WP_065981037.1 glycerol-3-phosphate dehydrogenase -
  BARD7_RS04485 (BARD7_00912) - 919444..921186 (+) 1743 WP_065981038.1 phospho-sugar mutase -
  BARD7_RS04490 (BARD7_00913) - 921331..922470 (+) 1140 WP_065981039.1 GAF domain-containing sensor histidine kinase -
  BARD7_RS04495 (BARD7_00914) vraR 922470..923114 (+) 645 WP_065981040.1 response regulator Regulator
  BARD7_RS04500 (BARD7_00915) - 923115..923639 (+) 525 WP_065981041.1 NADPH-dependent FMN reductase -
  BARD7_RS04505 (BARD7_00916) - 923653..923895 (-) 243 WP_065981042.1 YhdB family protein -
  BARD7_RS04510 (BARD7_00917) - 924087..924410 (+) 324 WP_013351652.1 DUF3889 domain-containing protein -
  BARD7_RS04515 (BARD7_00918) - 924453..925904 (-) 1452 WP_065981043.1 LysM peptidoglycan-binding domain-containing protein -
  BARD7_RS04520 (BARD7_00919) nsrR 926084..926518 (-) 435 WP_013351654.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23900.27 Da        Isoelectric Point: 6.2415

>NTDB_id=165266 BARD7_RS04495 WP_065981040.1 922470..923114(+) (vraR) [Bacillus amyloliquefaciens strain RD7-7]
MKIVIADDHHVVRKGLRYFFATQEDIEVVGEASTGAEALQQAEKTGPDIILMDLSMPDMDGIEAANIAAERFPDISIVVL
TSYSDREHVIPALKAGAKAYQLKDAQPDDLVKTLREVYSGRYRLSADIVPHVLNHMVQDDQNKEKYYQLTPREKDVLQEI
AKGKSNKEIAASLFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYNISEKAVK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=165266 BARD7_RS04495 WP_065981040.1 922470..923114(+) (vraR) [Bacillus amyloliquefaciens strain RD7-7]
ATGAAAATTGTGATCGCTGATGATCATCACGTTGTCCGCAAAGGACTGCGCTATTTCTTCGCCACTCAGGAAGATATTGA
AGTTGTCGGTGAGGCGTCTACCGGTGCTGAAGCGCTTCAGCAAGCTGAAAAGACGGGGCCGGACATCATTCTAATGGACT
TATCAATGCCTGATATGGACGGCATAGAGGCGGCAAATATTGCAGCTGAACGATTTCCGGACATCAGCATAGTCGTGTTG
ACGAGCTATTCTGATCGGGAGCATGTCATTCCCGCCCTAAAAGCCGGCGCCAAAGCGTATCAGCTGAAAGACGCCCAGCC
CGATGACTTAGTGAAAACGCTCCGTGAAGTGTATTCCGGACGTTACCGGCTGTCGGCGGACATTGTGCCTCATGTGCTCA
ATCATATGGTTCAGGATGATCAGAATAAGGAAAAATATTATCAGCTGACCCCTCGTGAAAAAGATGTTCTTCAAGAAATA
GCCAAAGGGAAAAGCAATAAGGAAATTGCCGCATCACTGTTTATTTCTGAAAAAACAGTGAAGACCCATGTGTCCAACCT
GCTGTCAAAGCTGAATCTTTCTGATCGGACGCAAGCGGCATTGTATGCCGTAAAATATAATATTTCTGAAAAGGCGGTAA
AATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.269

97.196

0.421
  degU Bacillus subtilis subsp. subtilis str. 168

38.356

100

0.393

Multiple sequence alignment