Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BSHJ0_RS17935 Genome accession   NZ_CP016894
Coordinates   3400827..3401462 (-) Length   211 a.a.
NCBI ID   WP_003243201.1    Uniprot ID   O32197
Organism   Bacillus subtilis strain HJ0-6     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3395827..3406462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSHJ0_RS17915 (BSHJ0_03524) yvzF 3396884..3397069 (-) 186 WP_003228521.1 YvzF family protein -
  BSHJ0_RS17920 (BSHJ0_03525) gerAA 3397187..3398635 (+) 1449 WP_003243555.1 spore germination receptor protein GerAA -
  BSHJ0_RS17925 (BSHJ0_03526) gerAB 3398604..3399701 (+) 1098 WP_009968145.1 spore germination receptor protein GerAB -
  BSHJ0_RS17930 (BSHJ0_03527) gerAC 3399698..3400819 (+) 1122 WP_003243203.1 spore germination receptor protein GerAC -
  BSHJ0_RS17935 (BSHJ0_03528) vraR 3400827..3401462 (-) 636 WP_003243201.1 two-component system response regulator LiaR Regulator
  BSHJ0_RS17940 (BSHJ0_03529) liaS 3401440..3402522 (-) 1083 WP_003228512.1 two-component system sensor histidine kinase LiaS -
  BSHJ0_RS17945 (BSHJ0_03530) liaF 3402519..3403244 (-) 726 WP_003228510.1 LiaRS two-component regulatory system accessory protein LiaF -
  BSHJ0_RS17950 (BSHJ0_03531) liaG 3403278..3404150 (-) 873 WP_003228508.1 DUF4097 domain-containing protein -
  BSHJ0_RS17955 (BSHJ0_03532) liaH 3404251..3404928 (-) 678 WP_003228506.1 stress responsive protein LiaH -
  BSHJ0_RS17960 (BSHJ0_03533) liaI 3404955..3405335 (-) 381 WP_003228504.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23124.76 Da        Isoelectric Point: 4.9049

>NTDB_id=165214 BSHJ0_RS17935 WP_003243201.1 3400827..3401462(-) (vraR) [Bacillus subtilis strain HJ0-6]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAVELSPDVILMDLVMEGMDGIEATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=165214 BSHJ0_RS17935 WP_003243201.1 3400827..3401462(-) (vraR) [Bacillus subtilis strain HJ0-6]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGTGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTGAAGCTACAAAGCAAATTTGCCGGGAGCTTTCCGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTTACAAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACGAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACCGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O32197

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.857

99.526

0.526
  degU Bacillus subtilis subsp. subtilis str. 168

38.565

100

0.408