Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   BSHJ0_RS08045 Genome accession   NZ_CP016894
Coordinates   1525868..1526893 (+) Length   341 a.a.
NCBI ID   WP_029726516.1    Uniprot ID   -
Organism   Bacillus subtilis strain HJ0-6     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1520868..1531893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSHJ0_RS08010 (BSHJ0_01565) ylbE 1521168..1521407 (+) 240 WP_003232231.1 YlbE-like family protein -
  BSHJ0_RS08015 (BSHJ0_01566) ylbF 1521523..1521972 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  BSHJ0_RS08020 (BSHJ0_01567) ylbG 1522027..1522299 (+) 273 WP_015715839.1 YlbG family protein -
  BSHJ0_RS08025 (BSHJ0_01568) rsmD 1522622..1523176 (+) 555 WP_029726518.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BSHJ0_RS08030 (BSHJ0_01569) coaD 1523181..1523666 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  BSHJ0_RS08035 (BSHJ0_01570) spoVV 1523677..1524903 (-) 1227 WP_029726517.1 dipicolinic acid transporter SpoVV -
  BSHJ0_RS08040 (BSHJ0_01571) ylbK 1525084..1525866 (+) 783 WP_003232221.1 patatin family protein -
  BSHJ0_RS08045 (BSHJ0_01572) sepM 1525868..1526893 (+) 1026 WP_029726516.1 protease DdcP Regulator
  BSHJ0_RS08050 (BSHJ0_01573) tmcAL 1526910..1528157 (-) 1248 WP_029726515.1 nucleotidyltransferase -
  BSHJ0_RS08055 (BSHJ0_01574) - 1528154..1528339 (-) 186 WP_003232215.1 hypothetical protein -
  BSHJ0_RS08060 (BSHJ0_01575) ylbN 1528367..1528885 (+) 519 WP_014479718.1 YceD family protein -
  BSHJ0_RS08065 (BSHJ0_01576) rpmF 1528907..1529086 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  BSHJ0_RS08070 (BSHJ0_01577) gerR 1529232..1529813 (+) 582 WP_015715842.1 sporulation specific transcriptional regulator GerR -
  BSHJ0_RS08075 (BSHJ0_01578) ylbP 1529870..1530352 (-) 483 WP_014476736.1 N-acetyltransferase -
  BSHJ0_RS08080 (BSHJ0_01579) panEA 1530512..1531408 (+) 897 WP_015252144.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37650.29 Da        Isoelectric Point: 8.1012

>NTDB_id=165149 BSHJ0_RS08045 WP_029726516.1 1525868..1526893(+) (sepM) [Bacillus subtilis strain HJ0-6]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEKGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=165149 BSHJ0_RS08045 WP_029726516.1 1525868..1526893(+) (sepM) [Bacillus subtilis strain HJ0-6]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAAAAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTTAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGTTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402