Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   BSHJ0_RS08015 Genome accession   NZ_CP016894
Coordinates   1521523..1521972 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain HJ0-6     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1516523..1526972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSHJ0_RS07975 (BSHJ0_01558) ctaE 1516539..1517162 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  BSHJ0_RS07980 (BSHJ0_01559) ctaF 1517165..1517497 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  BSHJ0_RS07985 (BSHJ0_01560) ctaG 1517525..1518418 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  BSHJ0_RS07990 (BSHJ0_01561) ylbA 1518450..1518812 (-) 363 WP_003232238.1 YugN family protein -
  BSHJ0_RS07995 (BSHJ0_01562) ylbB 1518952..1519398 (+) 447 WP_003221362.1 CBS domain-containing protein -
  BSHJ0_RS08000 (BSHJ0_01563) ylbC 1519482..1520522 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  BSHJ0_RS08005 (BSHJ0_01564) ylbD 1520754..1521152 (+) 399 WP_003232233.1 YlbD family protein -
  BSHJ0_RS08010 (BSHJ0_01565) ylbE 1521168..1521407 (+) 240 WP_003232231.1 YlbE-like family protein -
  BSHJ0_RS08015 (BSHJ0_01566) ylbF 1521523..1521972 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  BSHJ0_RS08020 (BSHJ0_01567) ylbG 1522027..1522299 (+) 273 WP_015715839.1 YlbG family protein -
  BSHJ0_RS08025 (BSHJ0_01568) rsmD 1522622..1523176 (+) 555 WP_029726518.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BSHJ0_RS08030 (BSHJ0_01569) coaD 1523181..1523666 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  BSHJ0_RS08035 (BSHJ0_01570) spoVV 1523677..1524903 (-) 1227 WP_029726517.1 dipicolinic acid transporter SpoVV -
  BSHJ0_RS08040 (BSHJ0_01571) ylbK 1525084..1525866 (+) 783 WP_003232221.1 patatin family protein -
  BSHJ0_RS08045 (BSHJ0_01572) sepM 1525868..1526893 (+) 1026 WP_029726516.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=165148 BSHJ0_RS08015 WP_003221370.1 1521523..1521972(+) (ylbF) [Bacillus subtilis strain HJ0-6]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=165148 BSHJ0_RS08015 WP_003221370.1 1521523..1521972(+) (ylbF) [Bacillus subtilis strain HJ0-6]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment