Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BEN15_RS00170 Genome accession   NZ_CP016877
Coordinates   34209..34853 (-) Length   214 a.a.
NCBI ID   WP_002951384.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain KLDS 3.1003     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 29209..39853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN15_RS00145 (BEN15_00145) - 31310..32308 (-) 999 WP_065972436.1 NAD(P)/FAD-dependent oxidoreductase -
  BEN15_RS00150 (BEN15_00150) trmD 32310..33029 (-) 720 WP_011226285.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BEN15_RS00155 (BEN15_00155) rimM 33019..33537 (-) 519 WP_011226286.1 ribosome maturation factor RimM -
  BEN15_RS00170 (BEN15_00170) vraR 34209..34853 (-) 645 WP_002951384.1 response regulator transcription factor Regulator
  BEN15_RS00175 (BEN15_00175) - 34843..35853 (-) 1011 WP_065972437.1 sensor histidine kinase -
  BEN15_RS00180 (BEN15_00180) liaF 35850..36548 (-) 699 WP_065972438.1 cell wall-active antibiotics response protein LiaF -
  BEN15_RS11425 - 36814..36969 (-) 156 WP_011226290.1 ion channel -
  BEN15_RS00185 (BEN15_00185) stkP/pknB 37606..39477 (-) 1872 WP_014621795.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24048.39 Da        Isoelectric Point: 4.5864

>NTDB_id=164985 BEN15_RS00170 WP_002951384.1 34209..34853(-) (vraR) [Streptococcus thermophilus strain KLDS 3.1003]
MSNKINVILVDDHEMVRLGLKSFLNLQGDVEVVGEAENGREGVDLALELRPDVVVMDLVMPELDGVQATLELLKEWPEAK
ILVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPNLHDDLTARERDILALL
AKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVSQDDE

Nucleotide


Download         Length: 645 bp        

>NTDB_id=164985 BEN15_RS00170 WP_002951384.1 34209..34853(-) (vraR) [Streptococcus thermophilus strain KLDS 3.1003]
ATGTCGAATAAGATTAATGTAATTTTGGTAGATGACCATGAAATGGTTCGTTTAGGCCTTAAGAGTTTCTTGAATCTCCA
AGGAGATGTAGAAGTGGTTGGAGAGGCAGAAAACGGCCGTGAGGGTGTCGATCTTGCCCTGGAGCTACGACCAGATGTCG
TTGTTATGGACCTTGTTATGCCTGAGCTAGATGGTGTTCAGGCGACTTTGGAATTGCTCAAAGAATGGCCTGAAGCTAAG
ATTCTAGTTTTGACAAGCTATTTGGACAATGAAAAAATTTATCCAGTCATTGAAGCTGGCGCCAAAGGCTATATGCTTAA
AACGAGCAGTGCAGCAGAGATTCTAAATAGTATCCGTAAGGTTTACCGTGGAGAGGAAGCTATCGAAACTGAGGTAGACA
ATAAGATTAAATACCACGATAGTCACCCGAACTTACATGATGACTTGACCGCGCGCGAACGTGATATCTTAGCCCTCCTA
GCTAAAGGCTATGACAATCAAACCATTGCTAACGAACTTTTTATTTCTTTAAAAACCGTCAAGACTCATGTGTCTAATAT
CCTTGGGAAATTAAATGTTGATGACCGTACTCAGGCTGTAGTTTATGCCTTTAGACATCATCTGGTTTCACAGGATGATG
AATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.485

96.262

0.486
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.379