Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | FORC18_RS01660 | Genome accession | NZ_CP013826 |
| Coordinates | 336742..337257 (+) | Length | 171 a.a. |
| NCBI ID | WP_005480477.1 | Uniprot ID | Q87L65 |
| Organism | Vibrio parahaemolyticus strain FORC_018 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 331742..342257
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC18_RS01640 (FORC18_0269) | - | 331875..334445 (-) | 2571 | WP_005496567.1 | penicillin-binding protein 1A | - |
| FORC18_RS01645 (FORC18_0270) | pilM | 334588..335604 (+) | 1017 | WP_029802009.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| FORC18_RS01650 (FORC18_0271) | pilN | 335588..336166 (+) | 579 | WP_053046790.1 | PilN domain-containing protein | Machinery gene |
| FORC18_RS01655 (FORC18_0272) | pilO | 336159..336752 (+) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| FORC18_RS01660 (FORC18_0273) | pilP | 336742..337257 (+) | 516 | WP_005480477.1 | pilus assembly protein PilP | Machinery gene |
| FORC18_RS01665 (FORC18_0274) | pilQ | 337289..339037 (+) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| FORC18_RS01670 (FORC18_0275) | aroK | 339226..339744 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| FORC18_RS01675 (FORC18_0276) | aroB | 339776..340876 (+) | 1101 | WP_053046792.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18928.09 Da Isoelectric Point: 10.5314
>NTDB_id=164885 FORC18_RS01660 WP_005480477.1 336742..337257(+) (pilP) [Vibrio parahaemolyticus strain FORC_018]
MRNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR
MRNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR
Nucleotide
Download Length: 516 bp
>NTDB_id=164885 FORC18_RS01660 WP_005480477.1 336742..337257(+) (pilP) [Vibrio parahaemolyticus strain FORC_018]
ATGAGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGAAGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGGATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTATTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
ATGAGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGAAGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGGATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTATTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio campbellii strain DS40M4 |
83.626 |
100 |
0.836 |
| pilP | Vibrio cholerae strain A1552 |
58.14 |
100 |
0.585 |