Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | FORC18_RS01650 | Genome accession | NZ_CP013826 |
| Coordinates | 335588..336166 (+) | Length | 192 a.a. |
| NCBI ID | WP_053046790.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain FORC_018 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 330588..341166
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC18_RS01635 (FORC18_0268) | oxyR | 330911..331819 (+) | 909 | WP_005465160.1 | DNA-binding transcriptional regulator OxyR | - |
| FORC18_RS01640 (FORC18_0269) | - | 331875..334445 (-) | 2571 | WP_005496567.1 | penicillin-binding protein 1A | - |
| FORC18_RS01645 (FORC18_0270) | pilM | 334588..335604 (+) | 1017 | WP_029802009.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| FORC18_RS01650 (FORC18_0271) | pilN | 335588..336166 (+) | 579 | WP_053046790.1 | PilN domain-containing protein | Machinery gene |
| FORC18_RS01655 (FORC18_0272) | pilO | 336159..336752 (+) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| FORC18_RS01660 (FORC18_0273) | pilP | 336742..337257 (+) | 516 | WP_005480477.1 | pilus assembly protein PilP | Machinery gene |
| FORC18_RS01665 (FORC18_0274) | pilQ | 337289..339037 (+) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| FORC18_RS01670 (FORC18_0275) | aroK | 339226..339744 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| FORC18_RS01675 (FORC18_0276) | aroB | 339776..340876 (+) | 1101 | WP_053046792.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22396.87 Da Isoelectric Point: 6.9944
>NTDB_id=164883 FORC18_RS01650 WP_053046790.1 335588..336166(+) (pilN) [Vibrio parahaemolyticus strain FORC_018]
MLYRINLLPWRENQREEHRRRFGGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
MLYRINLLPWRENQREEHRRRFGGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
Nucleotide
Download Length: 579 bp
>NTDB_id=164883 FORC18_RS01650 WP_053046790.1 335588..336166(+) (pilN) [Vibrio parahaemolyticus strain FORC_018]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGGCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCTGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGGCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCTGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
83.333 |
100 |
0.833 |
| pilN | Vibrio cholerae strain A1552 |
62.983 |
94.271 |
0.594 |