Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   BE843_RS06840 Genome accession   NZ_CP016872
Coordinates   1528626..1529075 (+) Length   149 a.a.
NCBI ID   WP_011214847.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain FFI104     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1523626..1534075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE843_RS06830 (BE843_06830) - 1524580..1525092 (+) 513 WP_027219362.1 pilus assembly protein -
  BE843_RS06835 (BE843_06835) - 1525105..1528614 (+) 3510 WP_011214848.1 pilus assembly protein -
  BE843_RS06840 (BE843_06840) pilE 1528626..1529075 (+) 450 WP_011214847.1 type IV pilin protein Machinery gene
  BE843_RS06845 (BE843_06845) comEC 1529153..1531360 (+) 2208 WP_011214846.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BE843_RS06850 (BE843_06850) - 1531386..1532693 (-) 1308 WP_011214845.1 tetratricopeptide repeat protein -
  BE843_RS06855 (BE843_06855) - 1532895..1533272 (-) 378 WP_011214844.1 hypothetical protein -
  BE843_RS06860 (BE843_06860) - 1533409..1533801 (+) 393 WP_011214843.1 hypothetical protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16288.54 Da        Isoelectric Point: 7.0760

>NTDB_id=164755 BE843_RS06840 WP_011214847.1 1528626..1529075(+) (pilE) [Legionella pneumophila subsp. pneumophila strain FFI104]
MLSHIDFMKNSRMKQSAFTLVEVLISMVIMGILVSIAYPSYLQYIQKSRRADAHATLTQDQIILERCYSQNFSYAAACGA
LPAFPQTTPNGYYTINISNLTATTYTLTATPVGTQAKDTECASMSINQANVKTAVDSSANAQPECWNPG

Nucleotide


Download         Length: 450 bp        

>NTDB_id=164755 BE843_RS06840 WP_011214847.1 1528626..1529075(+) (pilE) [Legionella pneumophila subsp. pneumophila strain FFI104]
ATGCTCAGTCATATAGATTTTATGAAGAATAGCCGTATGAAACAATCGGCGTTTACCCTGGTTGAAGTTCTGATCAGCAT
GGTCATTATGGGAATTCTGGTTTCAATTGCCTATCCATCCTATTTACAATATATCCAAAAATCCCGTCGTGCCGATGCTC
ACGCCACATTGACACAAGATCAAATTATTTTAGAACGCTGCTACTCACAGAATTTTTCTTATGCTGCGGCGTGTGGCGCC
TTACCAGCGTTTCCTCAAACAACTCCGAACGGATACTATACTATCAATATTTCAAACCTGACAGCCACAACGTATACCTT
AACTGCAACCCCTGTTGGAACTCAAGCCAAAGATACCGAGTGTGCCAGCATGTCAATTAACCAGGCCAATGTAAAAACAG
CAGTAGATTCCTCTGCCAATGCGCAACCAGAATGCTGGAATCCCGGTTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-38)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(39-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

98.658

100

0.987
  pilE Legionella pneumophila strain ERS1305867

98.658

100

0.987