Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   ATE51_RS06360 Genome accession   NZ_CP013733
Coordinates   1247209..1247859 (-) Length   216 a.a.
NCBI ID   WP_058914664.1    Uniprot ID   -
Organism   Campylobacter coli strain OR12     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1242209..1252859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATE51_RS06320 (ATE51_02544) - 1242268..1242660 (-) 393 WP_002840679.1 hypothetical protein -
  ATE51_RS06325 (ATE51_02546) - 1242677..1243522 (-) 846 WP_058914658.1 BspA family leucine-rich repeat surface protein -
  ATE51_RS06330 (ATE51_02548) - 1243537..1244541 (-) 1005 WP_058914659.1 toxic anion resistance protein -
  ATE51_RS11875 (ATE51_02550) - 1244654..1245052 (-) 399 WP_167366653.1 hypothetical protein -
  ATE51_RS06340 (ATE51_02556) - 1245511..1246008 (-) 498 WP_058914660.1 hypothetical protein -
  ATE51_RS06345 (ATE51_02558) - 1246022..1246222 (-) 201 WP_058914661.1 hypothetical protein -
  ATE51_RS06350 (ATE51_02560) - 1246293..1246799 (-) 507 WP_058914662.1 hypothetical protein -
  ATE51_RS06355 (ATE51_02562) - 1246807..1247025 (-) 219 WP_058914663.1 hypothetical protein -
  ATE51_RS06360 (ATE51_02564) CJE1441 1247209..1247859 (-) 651 WP_058914664.1 DNA/RNA non-specific endonuclease Regulator
  ATE51_RS06365 (ATE51_02566) - 1247878..1248525 (-) 648 WP_058914665.1 hypothetical protein -
  ATE51_RS06370 (ATE51_02568) - 1248540..1248758 (-) 219 WP_058914666.1 hypothetical protein -
  ATE51_RS06375 (ATE51_02570) - 1248755..1249231 (-) 477 WP_052802820.1 hypothetical protein -
  ATE51_RS06380 (ATE51_02574) - 1249350..1249685 (-) 336 WP_052802821.1 hypothetical protein -
  ATE51_RS06385 (ATE51_02576) - 1249682..1249996 (-) 315 WP_052802822.1 hypothetical protein -
  ATE51_RS06395 (ATE51_02578) - 1250196..1250948 (-) 753 WP_002840388.1 YopX family protein -
  ATE51_RS06400 (ATE51_02580) - 1251132..1251482 (-) 351 WP_002840065.1 hypothetical protein -
  ATE51_RS06405 (ATE51_02582) - 1251635..1252018 (-) 384 WP_058914667.1 YopX family protein -
  ATE51_RS06410 (ATE51_02584) - 1251999..1252280 (-) 282 WP_023890875.1 hypothetical protein -
  ATE51_RS06415 (ATE51_02586) - 1252335..1252556 (-) 222 WP_002823769.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25419.93 Da        Isoelectric Point: 9.7733

>NTDB_id=164555 ATE51_RS06360 WP_058914664.1 1247209..1247859(-) (CJE1441) [Campylobacter coli strain OR12]
MKKLMILPLLATLALADYTQYKPSEDFAKYFTKQSCSQVLDKFYYLNCYDYNYKGTKAVAYKLEAENLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYKNSGYDRGHTLSNASMRKTTQAQRSTFLMSNITPQNPQINQRVWNKIEKRERQVALKLGSLEVL
NLVNYDSNPQRIKNNIAIPSSYTKILKGDNFKECYQVPNHEVEDENIRSYQIKCQF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=164555 ATE51_RS06360 WP_058914664.1 1247209..1247859(-) (CJE1441) [Campylobacter coli strain OR12]
ATGAAAAAACTTATGATTTTACCGTTGCTAGCAACTCTAGCCTTAGCTGATTATACTCAATACAAACCAAGTGAAGATTT
TGCTAAGTATTTTACTAAGCAAAGTTGTTCACAAGTTTTAGATAAGTTTTATTATCTAAATTGTTATGATTATAATTATA
AAGGCACTAAAGCTGTAGCTTATAAATTAGAAGCGGAAAATTTAAAAGGCGAACAAATCAAAAAACGCCCACGCTTTGAA
GATGATACAAATATACCTAAAAAATACCGCACTACATGGAGTGATTATAAAAACAGCGGTTACGACAGGGGACACACTCT
TTCTAATGCTTCAATGAGAAAAACAACTCAAGCTCAAAGAAGCACTTTTTTGATGAGTAATATCACTCCTCAAAATCCAC
AAATCAATCAAAGAGTTTGGAATAAAATTGAAAAAAGAGAAAGACAAGTGGCTTTAAAACTTGGAAGTTTAGAAGTTTTA
AATTTGGTTAATTATGATAGTAATCCACAAAGAATAAAAAACAATATAGCTATTCCAAGCTCTTACACTAAGATTTTAAA
AGGTGATAATTTTAAAGAATGTTACCAAGTGCCTAATCATGAAGTAGAAGATGAGAATATAAGATCTTATCAGATCAAGT
GTCAATTCTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(27-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

92.056

99.074

0.912
  CJE0566 Campylobacter jejuni RM1221

92.056

99.074

0.912

Multiple sequence alignment