Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AVM03_RS05915 Genome accession   NZ_CP013727
Coordinates   1347856..1349586 (-) Length   576 a.a.
NCBI ID   WP_024085591.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1342856..1354586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS05890 (AVM03_05885) - 1343278..1343490 (+) 213 WP_003153183.1 spore germination protein -
  AVM03_RS05895 (AVM03_05890) - 1343616..1343828 (+) 213 WP_014305392.1 spore germination protein -
  AVM03_RS05900 (AVM03_05895) alr 1344003..1345184 (+) 1182 WP_025852858.1 alanine racemase -
  AVM03_RS05905 (AVM03_05900) spo0A 1345332..1346132 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  AVM03_RS05910 (AVM03_05905) spoIVB 1346413..1347693 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  AVM03_RS05915 (AVM03_05910) recN 1347856..1349586 (-) 1731 WP_024085591.1 DNA repair protein RecN Machinery gene
  AVM03_RS05920 (AVM03_05915) ahrC 1349618..1350067 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  AVM03_RS05925 (AVM03_05920) - 1350164..1351009 (-) 846 WP_015388017.1 TlyA family RNA methyltransferase -
  AVM03_RS05930 (AVM03_05925) dxs 1351006..1352907 (-) 1902 WP_044053456.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AVM03_RS05935 (AVM03_05930) - 1353051..1353941 (-) 891 WP_014305396.1 polyprenyl synthetase family protein -
  AVM03_RS05940 (AVM03_05935) - 1353931..1354185 (-) 255 WP_007408352.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64052.80 Da        Isoelectric Point: 4.6753

>NTDB_id=164463 AVM03_RS05915 WP_024085591.1 1347856..1349586(-) (recN) [Bacillus amyloliquefaciens strain MBE1283]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDKFAGAEAESALQ
AYHEGYERYMELLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLEALKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELQSLYMGKSTFDTEFLV
KTDPSASEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAMKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKEFKDGRTTTHVTPLSKQDKVAEIGRMIAGVEVTDLTKR
HAQELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=164463 AVM03_RS05915 WP_024085591.1 1347856..1349586(-) (recN) [Bacillus amyloliquefaciens strain MBE1283]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATTTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGGGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTATTAGTCGGCGGACGCGGCTCGTCCGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTATTGGACAGCGGTCATCCCGTTTTTGAAGTATGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGGGACATCAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTGACGATTGCGGCTTTAAGGGAAATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTAATGGAGGACGACAAACACTTGGAGCTTTTGGATAAATTTGCGGGCGCTGAGGCCGAATCCGCGCTTCAG
GCTTACCATGAAGGCTATGAGCGTTATATGGAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAAAGCGAGCAGGAAATGGC
GCATCGGTTAGACCTGATTCAATTTCAGCTTGAAGAAATCGAGTCGGCGAAGCTTGAATTGAATGAAGACGAACTTCTTC
AGGAAGAGCGGAAGCAGATATCCAACTTTGAAAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGCGAG
CAGGGGGGGCTTGACTGGGTCGGAATGGCCTCTGCCCAGCTTGAAGATATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCTGAAAGTGTGTCAAGTTCCTATTATCTGCTGGAGGATGCAACCTTTCAAATGCGCAATCTGTTAGATGATCTGGAAT
ATGACCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAATGAGATCAAACAGCTGAAGCGCAAATACGGAGCGACGGTA
GAAGACATTTTGGAATACGGCTCTAAAATAGAAGAGGAAATCGATCAAATCGAGAACCGCGACAGCCACCTTGAAGCCCT
GAAGAAGGAATTGGAGTCGGTCGGCAAAGATGTGGCCGTAGAAGCCGCCAATTTATCAAAAATCAGAAAAGCATGGGCCA
AGAAACTGGCGGAAGCGATTCATCAGGAATTACAAAGTCTGTATATGGGCAAATCAACGTTTGATACGGAATTTCTCGTG
AAAACCGATCCGTCAGCCAGTGAAGCACCGGTTGTTAACGGGCAGCCCGTGCAGCTTACCCAAAAGGGGATCGACCTTGT
GAAGTTTTTAATTTCAACAAACACCGGTGAGCCTTTAAAACCGCTGTCAAAGGTCGCTTCCGGAGGCGAGCTTTCAAGGG
TGATGCTGGCGATGAAGAGTATTTTTTCTTCCCAGCAGGATGTCACCTCCATCATCTTTGACGAAGTGGACACCGGTGTA
AGCGGGCGGGTTGCCCAAGCCATCGCGGAAAAAATCCATAAAGTATCGACCGGTTCACAGGTGCTCTGCATTACACACCT
GCCGCAGGTTGCCGCTATGGCGGATACGCACCTTCTGATCGCAAAAGAATTCAAAGACGGACGGACGACAACGCATGTCA
CGCCGCTTTCTAAGCAGGATAAGGTAGCGGAAATCGGCCGCATGATTGCGGGTGTTGAAGTGACCGATCTGACAAAACGG
CATGCACAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

88.542

100

0.885

Multiple sequence alignment