Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AVM03_RS05905 Genome accession   NZ_CP013727
Coordinates   1345332..1346132 (-) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1340332..1351132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS05875 (AVM03_05870) - 1340880..1341512 (+) 633 WP_058906178.1 helix-turn-helix domain-containing protein -
  AVM03_RS20240 (AVM03_05875) - 1341803..1341940 (+) 138 WP_014470646.1 hypothetical protein -
  AVM03_RS05885 (AVM03_05880) - 1342034..1343152 (+) 1119 WP_058906708.1 NADH-dependent flavin oxidoreductase -
  AVM03_RS05890 (AVM03_05885) - 1343278..1343490 (+) 213 WP_003153183.1 spore germination protein -
  AVM03_RS05895 (AVM03_05890) - 1343616..1343828 (+) 213 WP_014305392.1 spore germination protein -
  AVM03_RS05900 (AVM03_05895) alr 1344003..1345184 (+) 1182 WP_025852858.1 alanine racemase -
  AVM03_RS05905 (AVM03_05900) spo0A 1345332..1346132 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  AVM03_RS05910 (AVM03_05905) spoIVB 1346413..1347693 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  AVM03_RS05915 (AVM03_05910) recN 1347856..1349586 (-) 1731 WP_024085591.1 DNA repair protein RecN Machinery gene
  AVM03_RS05920 (AVM03_05915) ahrC 1349618..1350067 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  AVM03_RS05925 (AVM03_05920) - 1350164..1351009 (-) 846 WP_015388017.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=164462 AVM03_RS05905 WP_003153177.1 1345332..1346132(-) (spo0A) [Bacillus amyloliquefaciens strain MBE1283]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=164462 AVM03_RS05905 WP_003153177.1 1345332..1346132(-) (spo0A) [Bacillus amyloliquefaciens strain MBE1283]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TGTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGTGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCATCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCTGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97

Multiple sequence alignment